Co-expression analysis

Gene ID	Contig4804_at
Gene name
Homology with Arabidopsis	Similar to At1g72600: hydroxyproline-rich glycoprotein family protein (HF=1e-1)
Module size	9 genes
NF	0.06
%ile	8.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	95.2	0.85	Contig4804_at	Contig4804	-	-	1e-1	At1g72600	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.89	Contig2058_s_at	Contig2058	-	-	1e+0	At5g60680	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.88	HX03P07u_at	HX03P07u	-	-	4e-31	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.88	HVSMEa0002M23r2_at	HVSMEa0002M23r2	-	-	3e+0	At5g24650	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.90	Contig1580_x_at	Contig1580	precursor thionin	-	3e-1	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	O.I.	H.G.	S.X.	Please select
0.05	4.1	0.91	Contig7021_at	Contig7021	-	-	7e-1	At3g05425	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.91	HVSMEm0011I15r2_s_at	HVSMEm0011I15r2	-	-	1e+1	At5g04380	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.90	HF21P16r_at	HF21P16r	-	-	3e+0	At4g00420	double-stranded RNA-binding domain (DsRBD)-containing protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.90	Contig13638_at	Contig13638	-	-	4e+0	At4g25660	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.7	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4	96.6	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM372952	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.5	91.9	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.5	91.9	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.5	91.9	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.4	91.4	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
2.4	91.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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