Co-expression analysis

Gene ID Contig4797_at
Gene name
Homology with ArabidopsisSimilar to At3g02480: ABA-responsive protein-related (HF=2e+0)
Module size 8 genes
NF 0.29
%ile 37.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.88Contig4797_atContig4797--2e+0At3g02480ABA-responsive protein-relatedO.I.H.G.S.X.
0.5774.90.89Contig12332_atContig12332--4e+0At3g50410OBP1 (OBF BINDING PROTEIN 1)O.I.H.G.S.X.
0.5572.00.93Contig26369_atContig26369--4e+0At4g02620vacuolar ATPase subunit F family proteinO.I.H.G.S.X.
0.4661.00.91Contig11177_atContig11177--5e-1At5g53730harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.4053.10.90Contig6572_atContig6572--8e-1At5g07100WRKY26O.I.H.G.S.X.
0.2021.10.92Contig8505_s_atContig8505--2e+0At5g18280ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2)O.I.H.G.S.X.
0.1615.30.92Contig14949_atContig14949--3e-2At3g19100calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.075.80.90Contig21965_atContig21965--2e+0At2g13720ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.899.8GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.798.6GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM261041Dicktoo-deacclimation-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
4.396.4GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.695.3GSM161221cold treatment rep3GSE6993Barley low temperature stressLink to GEO
3.194.1GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.093.8GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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