Co-expression analysis

Gene ID	Contig4779_s_at
Gene name
Homology with Arabidopsis	Similar to At3g53710: AGD6 (HF=2e-8)
Module size	8 genes
NF	0.55
%ile	76.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.93	Contig4779_s_at	Contig4779	-	-	2e-8	At3g53710	AGD6	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.94	HF13G03r_at	HF13G03r	-	-	4e+0	At2g30020	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.94	Contig2053_at	Contig2053	-	-	5e+0	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.94	Contig4486_at	Contig4486	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.94	Contig7972_at	Contig7972	-	-	7e+0	At5g55810	AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	HVSMEi0017F16r2_x_at	HVSMEi0017F16r2	-	-	2e+0	At2g33620	DNA-binding family protein / AT-hook protein 1 (AHP1)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.94	Contig1012_s_at	Contig1012	-	-	2e-43	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig4672_at	Contig4672	-	-	4e-71	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
32.0	99.9	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
11.5	99.3	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
7.8	98.6	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
7.4	98.5	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
7.2	98.5	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.2	98.5	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.8	98.3	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.8	98.3	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.0	97.9	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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