Co-expression analysis

Gene ID	Contig4774_s_at
Gene name
Homology with Arabidopsis	Similar to At5g62720: integral membrane HPP family protein (HF=8e+0)
Module size	6 genes
NF	0.51
%ile	71.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.86	Contig4774_s_at	Contig4774	-	-	8e+0	At5g62720	integral membrane HPP family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.83	Contig10547_at	Contig10547	-	-	6e-1	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.86	Contig9778_at	Contig9778	-	-	2e+0	At3g02120	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.86	rbah29m06_s_at	rbah29m06	-	-	4e-1	At1g54050	17.4 kDa class III heat shock protein (HSP17.4-CIII)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.85	Contig5262_at	Contig5262	-	-	7e-8	At1g31970	STRS1 (STRESS RESPONSE SUPPRESSOR 1)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.86	Contig4285_at	Contig4285	-	-	4e-1	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.0	97.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.0	97.9	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.5	97.6	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.5	97.6	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.5	97.6	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.4	97.5	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.5	96.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the maize gene, Zm.10811.2.S1_at, orthologous to the query gene, Contig4774_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	Zm.10811.2.S1_at	At5g62720	-	-	8e+0	At4g14730	transmembrane protein-related	O.I.	H.G.	S.X.	Please select
0.96	99.8	Zm.10812.1.A1_at	At5g62720	-	-	2e-4	At2g28450	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.92	99.2	Zm.17408.1.A1_at	At5g62720	hypothetical protein LOC100273071	-	4e-1	At2g41380	embryo-abundant protein-related	O.I.	H.G.	S.X.	Please select
0.92	99.2	Zm.14513.4.S1_at	At5g62720	hypothetical protein LOC100192746	-	7e-31	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.89	96.8	Zm.7018.1.S1_at	At5g62720	DNA-directed RNA polymerase II 8.2 kDa polypeptide	-	9e-12	At1g61700	DNA-directed RNA polymerase II, putative (RPB10)	O.I.	H.G.	S.X.	Please select
0.88	96.7	Zm.1100.1.S1_at	At5g62720	-	-	4e+0	At5g37475	translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.87	96.4	Zm.16913.1.S1_at	At5g62720	GT1 protein	-	2e-24	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	O.I.	H.G.	S.X.	Please select
0.86	96.3	Zm.10811.7.S1_at	At5g62720	Glycine-rich protein	-	7e-3	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.85	95.9	Zm.1438.1.S1_at	At5g62720	hypothetical protein LOC100191302	-	2e-13	At4g01100	ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.81	94.3	Zm.8973.1.S1_a_at	At5g62720	hypothetical protein LOC100191732	-	2e-2	At2g18770	signal recognition particle binding	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.3944.1.S1_at	At5g62720	opaque endosperm2	-	9e-1	At4g02640	BZO2H1	O.I.	H.G.	S.X.	Please select
0.73	89.9	Zm.3845.2.A1_at	At5g62720	hypothetical protein LOC100272900	-	2e-50	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.9641.1.A1_at	At5g62720	-	-	1e-3	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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