Co-expression analysis

Gene ID	Contig4774_s_at
Gene name
Homology with Arabidopsis	Similar to At5g62720: integral membrane HPP family protein (HF=8e+0)
Module size	6 genes
NF	0.51
%ile	71.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.86	Contig4774_s_at	Contig4774	-	-	8e+0	At5g62720	integral membrane HPP family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.83	Contig10547_at	Contig10547	-	-	6e-1	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.86	Contig9778_at	Contig9778	-	-	2e+0	At3g02120	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.86	rbah29m06_s_at	rbah29m06	-	-	4e-1	At1g54050	17.4 kDa class III heat shock protein (HSP17.4-CIII)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.85	Contig5262_at	Contig5262	-	-	7e-8	At1g31970	STRS1 (STRESS RESPONSE SUPPRESSOR 1)	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.86	Contig4285_at	Contig4285	-	-	4e-1	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.0	97.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.0	97.9	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.5	97.6	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.5	97.6	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.5	97.6	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.4	97.5	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.5	96.7	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL94Contig1_at, orthologous to the query gene, Contig4774_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	89.7	PsAffx.CL94Contig1_at	At5g62720	-	-	5e+0	At2g31090	unknown protein	O.I.	H.G.	S.X.	Please select
0.93	99.1	PsAffx.CL301Contig1_at	At5g62720	-	-	2e+0	At1g77330	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	O.I.	H.G.	S.X.	Please select
0.92	98.9	PsAffx.CL470Contig1_at	At5g62720	-	-	6e+0	At2g04480	unknown protein	O.I.	H.G.	S.X.	Please select
0.90	93.7	PsAffx.CL1241Contig1_at	At5g62720	-	-	1e+1	At2g36210	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.89	93.5	PsAffx.CL4Contig3_at	At5g62720	-	-	7e-1	At5g14590	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.88	93.4	PsAffx.CL381Contig1_at	At5g62720	-	-	9e-1	At2g43400	ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase)	O.I.	H.G.	S.X.	Please select
0.84	92.6	PsAffx.CL52Contig1_at	At5g62720	-	-	8e-10	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.83	92.5	PsAffx.CL124Contig1_at	At5g62720	-	-	2e-4	At2g23930	SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)	O.I.	H.G.	S.X.	Please select
0.81	91.7	PsAffx.CL83Contig1_at	At5g62720	-	-	1e+1	At5g12060	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.79	90.8	PsAffx.psHB027xB22f_at	At5g62720	-	-	4e+0	At5g39210	CRR7 (CHLORORESPIRATORY REDUCTION 7)	O.I.	H.G.	S.X.	Please select
0.78	90.6	PsAffx.CL324Contig1_at	At5g62720	-	-	2e+0	At4g30820	cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related	O.I.	H.G.	S.X.	Please select
0.78	90.6	PsAffx.psMC009xE03f_at	At5g62720	-	-	2e-1	At3g10405	unknown protein	O.I.	H.G.	S.X.	Please select
0.78	90.6	PsAffx.psMY005iE01r_s_at	At5g62720	-	-	1e-3	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.71	87.8	GmaAffx.39956.1.A1_s_at	At5g62720	-	-	1e+1	At3g44100	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please select
0.70	87.1	GmaAffx.58235.1.S1_at	At5g62720	-	-	1e+1	At2g15760	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.69	86.8	PsAffx.CL809Contig1_at	At5g62720	-	-	2e-3	At5g42740	glucose-6-phosphate isomerase, cytosolic (PGIC)	O.I.	H.G.	S.X.	Please select
0.69	86.8	PsAffx.CL322Contig1_s_at	At5g62720	-	-	2e+1	At5g44578	unknown protein	O.I.	H.G.	S.X.	Please select
0.68	86.4	PsAffx.CL162Contig1_at	At5g62720	-	-	1e+1	At5g46350	WRKY8	O.I.	H.G.	S.X.	Please select
0.66	84.0	PsAffx.CL148Contig1_at	At5g62720	-	-	6e-1	At5g60850	OBP4	O.I.	H.G.	S.X.	Please select
0.59	79.5	GmaAffx.58228.1.S1_s_at	At5g62720	-	-	2e-1	At1g07860	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	GmaAffx.64860.1.S1_s_at	At5g62720	-	-	3e+0	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.56	78.2	GmaAffx.35357.1.A1_s_at	At5g62720	-	-	8e-13	At2g36530	LOS2	O.I.	H.G.	S.X.	Please select
0.55	76.3	PsAffx.CL164Contig1_at	At5g62720	-	-	1e-2	At5g51820	PGM (PHOSPHOGLUCOMUTASE)	O.I.	H.G.	S.X.	Please select
0.50	71.7	PsAffx.CL184Contig2_at	At5g62720	-	-	9e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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