Co-expression analysis

Gene ID	Contig4773_at
Gene name
Homology with Arabidopsis	Similar to At5g62720: integral membrane HPP family protein (HF=8e+0)
Module size	9 genes
NF	0.53
%ile	73.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	62.2	0.91	Contig4773_at	Contig4773	-	-	8e+0	At5g62720	integral membrane HPP family protein	O.I.	H.G.	S.X.	Please select
0.74	89.1	0.93	Contig24268_at	Contig24268	-	-	2e+0	At5g57345	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.92	Contig4494_x_at	Contig4494	-	-	5e+0	At5g55508	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.92	Contig9113_s_at	Contig9113	-	-	2e-26	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.93	HVSMEh0085G19f_at	HVSMEh0085G19f	-	-	3e+0	At1g75510	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.93	Contig6325_at	Contig6325	-	-	4e-1	At5g25490	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.92	Contig12027_at	Contig12027	ORG4	-	2e-3	At2g06010	ORG4 (OBP3-RESPONSIVE GENE 4)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.93	HY02G07u_at	HY02G07u	-	-	4e+0	At2g28420	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.92	HVSMEn0011A10f_x_at	HVSMEn0011A10f	-	-	2e+0	At3g47990	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.7	99.8	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
5.0	97.2	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.5	91.9	GSM160744	drought control rep2	GSE6990	Barley drought stress
2.5	91.9	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
2.5	91.9	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.3	90.9	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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