Co-expression analysis

Gene ID Contig4761_at
Gene name
Homology with ArabidopsisSimilar to At1g05520: transport protein, putative (HF=2e-8)
Module size 19 genes
NF 0.42
%ile 58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6581.40.73Contig4761_atContig4761--2e-8At1g05520transport protein, putativeO.I.H.G.S.X.
0.6178.70.86HVSMEl0014B21r2_atHVSMEl0014B21r2--3e+0At4g20220-O.I.H.G.S.X.
0.6077.30.84Contig24078_atContig24078--4e+0At3g27080TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)O.I.H.G.S.X.
0.5167.50.77Contig956_x_atContig956--2e-2At5g02380MT2B (METALLOTHIONEIN 2B)O.I.H.G.S.X.
0.5066.90.80Contig21846_atContig21846--3e-1At4g1810060S ribosomal protein L32 (RPL32A)O.I.H.G.S.X.
0.4963.70.80Contig17010_atContig17010--1e-7At2g27880AGO5 (ARGONAUTE 5)O.I.H.G.S.X.
0.4661.00.76Contig19407_atContig19407--5e-1At1g32580plastid developmental protein DAG, putativeO.I.H.G.S.X.
0.4356.40.80Contig17181_atContig17181--6e-4At5g39590-O.I.H.G.S.X.
0.4255.20.83Contig15685_atContig15685--7e-1At1g23780F-box family proteinO.I.H.G.S.X.
0.4255.20.79Contig17091_atContig17091--6e+0At4g21745-O.I.H.G.S.X.
0.4255.20.80Contig7115_atContig7115--9e-1At5g51100FSD2 (FE SUPEROXIDE DISMUTASE 2)O.I.H.G.S.X.
0.4053.10.80Contig15774_atContig15774--3e-2At5g54200WD-40 repeat family proteinO.I.H.G.S.X.
0.4053.10.81Contig22888_atContig22888--1e+0At5g27944sequence-specific DNA binding / transcription factorO.I.H.G.S.X.
0.3747.90.78Contig7504_atContig7504--1e+0At1g52825unknown proteinO.I.H.G.S.X.
0.3647.10.81Contig10935_atContig10935--1e-2At5g41130acyltransferase/ catalyticO.I.H.G.S.X.
0.3342.60.81Contig8149_atContig8149--6e+0At4g14225zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.3342.60.85Contig5452_atContig5452--9e-22At2g47250RNA helicase, putativeO.I.H.G.S.X.
0.2835.50.79Contig24086_atContig24086--2e+0At3g27950early nodule-specific protein, putativeO.I.H.G.S.X.
0.2835.50.80Contig6089_atContig6089--2e-23At3g15610transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.099.5GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
9.999.1GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
9.699.0GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.599.0GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.498.8GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
8.198.7GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.898.6GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
6.998.3GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.698.2GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage