Co-expression analysis

Gene ID	Contig4760_s_at
Gene name
Homology with Arabidopsis	Similar to At4g38700: disease resistance-responsive family protein (HF=1e+0)
Module size	6 genes
NF	0.70
%ile	90.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig4760_s_at	Contig4760	-	-	1e+0	At4g38700	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.96	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig6995_at	Contig6995	-	-	2e-8	At5g57270	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.97	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.97	Contig5297_at	Contig5297	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig6581_at	Contig6581	-	-	6e-2	At3g26330	CYP71B37	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.0	98.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.9	95.8	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.6	95.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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