Co-expression analysis

Gene ID	Contig4747_at
Gene name
Homology with Arabidopsis	Similar to At2g05620: PGR5 (proton gradient regulation 5) (HF=2e+0)
Module size	6 genes
NF	0.65
%ile	86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig4747_at	Contig4747	-	-	2e+0	At2g05620	PGR5 (proton gradient regulation 5)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.97	Contig5286_at	Contig5286	-	-	6e-1	At2g44310	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig3526_at	Contig3526	-	-	1e-3	At1g11910	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig5257_at	Contig5257	-	-	1e+0	At4g00200	DNA binding	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.97	Contig5417_at	Contig5417	-	-	4e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.97	Contig3563_at	Contig3563	-	-	2e+0	At5g54000	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.1	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.6	92.3	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.5	91.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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