CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4715_at

Gene name
Homology with Arabidopsis Similar to At4g10810: unknown protein (HF=1e+0)

Module size 6 genes

NF 0.43

%ile 59.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 92.5 0.96 Contig4715_at Contig4715 - - 1e+0 At4g10810 unknown protein O.I. H.G. S.X.
0.61 78.7 0.96 Contig15165_s_at Contig15165 - - 2e+0 At3g28460 unknown protein O.I. H.G. S.X.
0.36 47.1 0.96 Contig11372_at Contig11372 - - 5e-7 At3g27100 - O.I. H.G. S.X.
0.30 37.0 0.96 Contig10684_at Contig10684 - - 8e-17 At1g31780 - O.I. H.G. S.X.
0.29 35.5 0.96 Contig8943_at Contig8943 - - 1e-6 At1g75990 26S proteasome regulatory subunit S3, putative (RPN3) O.I. H.G. S.X.
0.27 32.1 0.96 Contig10954_at Contig10954 - - 4e+0 At3g21175 ZML1 (ZIM-LIKE 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.5 95.1 GSM160823 19% SWC rep1 GSE6990 Barley drought stress
3.4 94.8 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
3.3 94.6 GSM160819 38% SWC rep1 GSE6990 Barley drought stress
3.1 94.1 GSM160826 19% SWC rep3 GSE6990 Barley drought stress
3.0 93.8 GSM160822 38% SWC rep3 GSE6990 Barley drought stress
2.9 93.4 GSM261027 ABA-Late-rep1 GSE10328 ABA experiment
2.6 92.3 GSM160831 7% SWC rep1 GSE6990 Barley drought stress
2.5 91.9 GSM68900 8 h salt stressed replicate 3 GSE3097 Barley1 salinity stress study
2.5 91.9 GSM160464 drought control rep1 GSE6990 Barley drought stress
2.5 91.9 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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