Co-expression analysis

Gene ID Contig4701_at
Gene name
Homology with ArabidopsisSimilar to At1g19660: wound-responsive family protein (HF=2e-1)
Module size 15 genes
NF 0.46
%ile 64.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.90Contig4701_atContig4701--2e-1At1g19660wound-responsive family proteinO.I.H.G.S.X.
0.9095.70.93rbasd23b03_s_atrbasd23b03--8e-1At5g15150ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)O.I.H.G.S.X.
0.5674.30.92Contig24006_atContig24006--4e+0At4g13150unknown proteinO.I.H.G.S.X.
0.5369.70.93Contig5106_atContig5106--3e-8At5g66650unknown proteinO.I.H.G.S.X.
0.5167.50.92Contig5108_s_atContig5108--6e-9At1g48850EMB1144 (embryo defective 1144)O.I.H.G.S.X.
0.5066.90.94Contig1269_atContig1269--2e-84At3g17390MTO3 (METHIONINE OVER-ACCUMULATOR 3)O.I.H.G.S.X.
0.4458.90.93Contig33_atContig33--6e+0At4g04780MED21 (MEDIATOR 21)O.I.H.G.S.X.
0.4356.40.93Contig11093_atContig11093--3e-21At4g20440smB (small nuclear ribonucleoprotein associated protein B)O.I.H.G.S.X.
0.4255.20.94Contig25358_atContig25358--2e+0At1g60850ATRPAC42O.I.H.G.S.X.
0.4255.20.94rbasd3a10_s_atrbasd3a10--1e-6At4g24770RBP31 (31-KDA RNA BINDING PROTEIN)O.I.H.G.S.X.
0.4153.90.94Contig5805_atContig5805--3e-2At4g20280TAF11 (TBP-ASSOCIATED FACTOR 11)O.I.H.G.S.X.
0.4153.90.93Contig143_s_atContig143--6e-52At4g21980APG8A (AUTOPHAGY 8A)O.I.H.G.S.X.
0.4053.10.92Contig4140_s_atContig4140--2e-7At4g05530IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)O.I.H.G.S.X.
0.2835.50.93Contig651_atContig651--2e-20At4g31990ASP5 (ASPARTATE AMINOTRANSFERASE 5)O.I.H.G.S.X.
0.2427.20.94Contig5804_atContig5804--2e-22At5g23120HCF136O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.496.6GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
4.196.2GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
3.394.6GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.294.3GSM146362Golden Promise Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.294.3GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
3.294.3GSM146359Golden Promise Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.194.1GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.893.1GSM146361Golden Promise Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.893.1GSM146365Maythorpe Root Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM146368Maythorpe Root Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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