Co-expression analysis

Gene ID	Contig4695_at
Gene name
Homology with Arabidopsis	Similar to At1g67950: RNA recognition motif (RRM)-containing protein (HF=7e-1)
Module size	8 genes
NF	0.47
%ile	66.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.95	Contig4695_at	Contig4695	-	-	7e-1	At1g67950	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig13302_at	Contig13302	-	-	3e-1	At5g63150	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig25066_at	Contig25066	-	-	5e+0	At5g10730	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig5733_at	Contig5733	-	-	2e+0	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig7822_at	Contig7822	-	-	2e-1	At4g09990	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	HK06B02r_s_at	HK06B02r	-	-	1e-5	At3g43810	CAM7 (CALMODULIN 7)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig361_s_at	Contig361	-	-	9e-8	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig4755_at	Contig4755	-	-	1e+1	At5g15600	SP1L4 (SPIRAL1-LIKE4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	93.8	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.5	91.9	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.3	90.9	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
2.2	90.3	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.2	90.3	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.2	90.3	GSM398252	Martin_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.2	90.3	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.1	89.7	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage