Co-expression analysis

Gene ID Contig4694_s_at
Gene name
Homology with ArabidopsisSimilar to At2g15535: LCR10 (Low-molecular-weight cysteine-rich 10) (HF=1e+0)
Module size 7 genes
NF 0.58
%ile 80.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.50.87Contig4694_s_atContig4694--1e+0At2g15535LCR10 (Low-molecular-weight cysteine-rich 10)O.I.H.G.S.X.
0.6178.70.93Contig5374_atContig5374--3e+0At3g23170unknown proteinO.I.H.G.S.X.
0.5674.30.89HM02O03r_s_atHM02O03r--6e-2At3g60540sec61beta family proteinO.I.H.G.S.X.
0.5066.90.95HT11K16u_s_atHT11K16u--9e-2At5g40330MYB23 (MYB DOMAIN PROTEIN 23)O.I.H.G.S.X.
0.4458.90.96Contig3478_atContig3478--1e-115At5g05170CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)O.I.H.G.S.X.
0.4053.10.93HB09G01w_s_atHB09G01w--8e-1At2g39960microsomal signal peptidase 25 kDa subunit, putative (SPC25)O.I.H.G.S.X.
0.4053.10.93Contig3381_s_atContig3381SD10 protein-4e+0At4g24015zinc finger (RING-H2 type) protein-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.199.2GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
10.199.1GSM71154Morex stress and unstress replicate 1GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
8.198.7GSM71140OWB-D stress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
5.797.7GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
5.597.6GSM71156Morex stress and unstress replicate 3GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
5.497.5GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.596.7GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.196.2GSM71155Morex stress and unstress replicate 2GSE3170 Barley single feature polymorphisms and drought stress gene expressionLink to GEO
3.895.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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