Co-expression analysis

Gene ID	Contig4694_s_at
Gene name
Homology with Arabidopsis	Similar to At2g15535: LCR10 (Low-molecular-weight cysteine-rich 10) (HF=1e+0)
Module size	7 genes
NF	0.58
%ile	80.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	0.87	Contig4694_s_at	Contig4694	-	-	1e+0	At2g15535	LCR10 (Low-molecular-weight cysteine-rich 10)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.93	Contig5374_at	Contig5374	-	-	3e+0	At3g23170	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.89	HM02O03r_s_at	HM02O03r	-	-	6e-2	At3g60540	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	HT11K16u_s_at	HT11K16u	-	-	9e-2	At5g40330	MYB23 (MYB DOMAIN PROTEIN 23)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig3478_at	Contig3478	-	-	1e-115	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	HB09G01w_s_at	HB09G01w	-	-	8e-1	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig3381_s_at	Contig3381	SD10 protein	-	4e+0	At4g24015	zinc finger (RING-H2 type) protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.1	99.2	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
10.1	99.1	GSM71154	Morex stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
8.1	98.7	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.7	97.7	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.5	97.6	GSM71156	Morex stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
5.4	97.5	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM71155	Morex stress and unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.8	95.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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