Co-expression analysis

Gene ID Contig4647_at
Gene name
Homology with ArabidopsisSimilar to At2g37990: ribosome biogenesis regulatory protein (RRS1) family protein (HF=3e-3)
Module size 6 genes
NF 0.55
%ile 76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.96Contig4647_atContig4647--3e-3At2g37990ribosome biogenesis regulatory protein (RRS1) family proteinO.I.H.G.S.X.
0.6784.70.96Contig6066_atContig6066--4e+0At5g23640unknown proteinO.I.H.G.S.X.
0.5774.90.96Contig8299_atContig8299--3e-9At3g20650mRNA capping enzyme family proteinO.I.H.G.S.X.
0.4661.00.96Contig4172_atContig4172--2e-2At3g52090NRPB11O.I.H.G.S.X.
0.4458.90.97Contig15070_atContig15070--1e-2At4g10810unknown proteinO.I.H.G.S.X.
0.3647.10.96Contig8629_atContig8629--3e-6At2g17190ubiquitin family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.30.96Contig1013_s_atContig1013--2e-149At2g39730RCA (RUBISCO ACTIVASE)O.I.H.G.S.X.
0.4458.90.97Contig4647_s_atContig4647--3e-3At2g37990ribosome biogenesis regulatory protein (RRS1) family proteinO.I.H.G.S.X.
0.4356.40.93HM07I05r_atHM07I05r--1e-1At1g5986017.6 kDa class I heat shock protein (HSP17.6A-CI)O.I.H.G.S.X.
0.4255.20.96Contig5510_s_atContig5510--1e-1At5g04250OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.4053.10.95Contig5356_s_atContig5356--9e-1At4g11870unknown proteinO.I.H.G.S.X.
0.4053.10.95Contig7624_atContig7624--9e-16At2g27680aldo/keto reductase family proteinO.I.H.G.S.X.
0.3849.50.93Contig6079_s_atContig6079--4e-2At3g23620brix domain-containing proteinO.I.H.G.S.X.
0.3849.50.95HY03N17u_s_atHY03N17u--2e-1At3g19560F-box family proteinO.I.H.G.S.X.
0.3849.50.95Contig10872_atContig10872--2e+0At4g11911-O.I.H.G.S.X.
0.3647.10.93Contig9943_atContig9943--2e-19At2g20840secretory carrier membrane protein (SCAMP) family proteinO.I.H.G.S.X.
0.3647.10.95HVSMEb0004M17r2_atHVSMEb0004M17r2--1e+0Atmg00450-O.I.H.G.S.X.
0.3647.10.96Contig901_x_atContig901--0At1g56070LOS1O.I.H.G.S.X.
0.3545.10.95rbags15n22_atrbags15n22--1e+0At1g63270ATNAP10O.I.H.G.S.X.
0.3545.10.95HU02E04u_s_atHU02E04u--8e-5At3g27720zinc finger protein-relatedO.I.H.G.S.X.
0.3342.60.95Contig7322_atContig7322--2e-3At3g27310PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)O.I.H.G.S.X.
0.3240.30.95Contig6841_atContig6841--6e-1At3g59980tRNA-binding region domain-containing proteinO.I.H.G.S.X.
0.3138.60.94S0001000013A11F1_s_atS0001000013A11F1--9e-4At5g65960unknown proteinO.I.H.G.S.X.
0.3037.00.94HVSMEf0021O16r2_x_atHVSMEf0021O16r2--2e-1At3g27160GHS1 (GLUCOSE HYPERSENSITIVE 1)O.I.H.G.S.X.
0.3037.00.94Contig3315_s_atContig3315--1e+0At3g14190unknown proteinO.I.H.G.S.X.
0.2935.50.94Contig17307_atContig17307--1e+0At3g24050GATA transcription factor 1 (GATA-1)O.I.H.G.S.X.
0.2935.50.95Contig5354_atContig5354--4e-33At5g06140SNX1 (SORTING NEXIN 1)O.I.H.G.S.X.
0.2935.50.95Contig3419_atContig3419--7e-5At5g48385-O.I.H.G.S.X.
0.2732.10.94Contig19203_atContig19203--2e+0At3g47833unknown proteinO.I.H.G.S.X.
0.2732.10.94Contig26336_atContig26336--8e-3At1g11200unknown proteinO.I.H.G.S.X.
0.2732.10.94Contig9095_atContig9095--2e+0At1g29380-O.I.H.G.S.X.
0.2732.10.95Contig8151_atContig8151--1e-20At4g22756SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)O.I.H.G.S.X.
0.2732.10.95HZ59L09r_s_atHZ59L09r--8e+0At5g59840Ras-related GTP-binding family proteinO.I.H.G.S.X.
0.2630.40.94Contig5740_atContig5740--7e-5At3g10490anac052 (Arabidopsis NAC domain containing protein 52)O.I.H.G.S.X.
0.2528.90.92Contig18516_atContig18516--2e+0At3g46666unknown proteinO.I.H.G.S.X.
0.2528.90.93Contig15912_atContig15912--5e+0Atmg01370-O.I.H.G.S.X.
0.2528.90.95Contig11131_s_atContig11131--6e-25At2g45500ATP binding / nucleoside-triphosphatase/ nucleotide bindingO.I.H.G.S.X.
0.2528.90.96Contig603_atContig603--7e+0At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.999.8GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
16.099.6GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.998.9GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.097.9GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.897.8GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.297.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM372999genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.396.4GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.196.2GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage