Co-expression analysis

Gene ID	Contig4647_at
Gene name
Homology with Arabidopsis	Similar to At2g37990: ribosome biogenesis regulatory protein (RRS1) family protein (HF=3e-3)
Module size	6 genes
NF	0.55
%ile	76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.96	Contig4647_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig6066_at	Contig6066	-	-	4e+0	At5g23640	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig8299_at	Contig8299	-	-	3e-9	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig4172_at	Contig4172	-	-	2e-2	At3g52090	NRPB11	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig15070_at	Contig15070	-	-	1e-2	At4g10810	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig8629_at	Contig8629	-	-	3e-6	At2g17190	ubiquitin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.9	99.8	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.0	99.6	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.8	97.8	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3	96.4	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.1	96.2	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the grape gene, 1606576_at, orthologous to the query gene, Contig4647_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	95.4	1606576_at	At2g37990	hypothetical protein LOC100253336	-	2e-6	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	1607212_s_at	At2g37990	similar to F2D10.18	-	2e-10	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1620966_at	At2g37990	hypothetical protein LOC100256915	-	6e+0	Atmg01200	-	O.I.	H.G.	S.X.	Please select
0.39	54.9	1617666_a_at	At2g37990	hypothetical protein LOC100260025	-	6e-2	At5g54360	zinc finger (C2H2 type) family protein-related	O.I.	H.G.	S.X.	Please select
0.37	51.7	1614125_at	At2g37990	hypothetical protein LOC100255348	-	2e-20	At4g23620	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.35	48.5	1615285_at	At2g37990	hypothetical protein LOC100241959	-	7e-22	At2g18030	peptide methionine sulfoxide reductase family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	1612768_at	At2g37990	hypothetical protein LOC100244114	-	1e+0	At4g19100	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1614727_at	At2g37990	-	-	5e-13	At1g36050	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1612463_at	At2g37990	hypothetical protein LOC100263499	-	3e-13	At3g13700	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.30	39.4	1622683_at	At2g37990	hypothetical protein LOC100244354	-	3e-1	At3g32920	ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.29	37.7	1621949_at	At2g37990	-	-	2e+0	At4g12100	ubiquitin protein ligase binding	O.I.	H.G.	S.X.	Please select
0.27	34.0	1610752_at	At2g37990	hypothetical protein LOC100246682	-	1e-17	At3g18030	ATHAL3A	O.I.	H.G.	S.X.	Please select
0.25	30.5	1610622_at	At2g37990	hypothetical protein LOC100244354	-	2e-1	At4g19150	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1608441_at	At2g37990	hypothetical protein LOC100260164	-	2e-2	At5g22840	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1609342_at	At2g37990	hypothetical protein LOC100263823	-	7e-2	At2g47850	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1618853_at	At2g37990	hypothetical protein LOC100258103	-	1e+0	At4g39986	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1613377_at	At2g37990	hypothetical protein LOC100243326	-	4e+0	At3g09350	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1607934_at	At2g37990	hypothetical protein LOC100257058	-	2e-21	At5g10750	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1608424_at	At2g37990	hypothetical protein LOC100241506	-	1e-11	At2g27285	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1613309_at	At2g37990	hypothetical protein LOC100266124	-	1e-2	At5g46840	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1613668_at	At2g37990	hypothetical protein LOC100263774	-	3e-23	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	1622171_at	At2g37990	hypothetical protein LOC100244384	-	6e-28	At5g60670	60S ribosomal protein L12 (RPL12C)	O.I.	H.G.	S.X.	Please select
0.14	14.4	1618811_at	At2g37990	hypothetical protein LOC100243112	-	3e-11	At1g11240	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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