CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4647_at

Gene name
Homology with Arabidopsis Similar to At2g37990: ribosome biogenesis regulatory protein (RRS1) family protein (HF=3e-3)

Module size 6 genes

NF 0.55

%ile 76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 66.9 0.96 Contig4647_at Contig4647 - - 3e-3 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein O.I. H.G. S.X.
0.67 84.7 0.96 Contig6066_at Contig6066 - - 4e+0 At5g23640 unknown protein O.I. H.G. S.X.
0.57 74.9 0.96 Contig8299_at Contig8299 - - 3e-9 At3g20650 mRNA capping enzyme family protein O.I. H.G. S.X.
0.46 61.0 0.96 Contig4172_at Contig4172 - - 2e-2 At3g52090 NRPB11 O.I. H.G. S.X.
0.44 58.9 0.97 Contig15070_at Contig15070 - - 1e-2 At4g10810 unknown protein O.I. H.G. S.X.
0.36 47.1 0.96 Contig8629_at Contig8629 - - 3e-6 At2g17190 ubiquitin family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.9 99.8 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
16.0 99.6 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.9 98.9 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.0 97.9 GSM282029 Malting_day1_Merit_rep3 GSE11200 Expression data from malting barley seeds
5.9 97.9 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.8 97.8 GSM282028 Malting_day1_Merit_rep1 GSE11200 Expression data from malting barley seeds
5.2 97.4 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM372999 genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3 96.4 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.1 96.2 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the wheat gene, Ta.9976.1.S1_x_at, orthologous to the query gene, Contig4647_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.47 67.9 Ta.9976.1.S1_x_at At2g37990 - - 2e-4 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein O.I. H.G. S.X.
0.69 86.9 Ta.9357.1.S1_x_at At2g37990 - - 2e-10 At2g44860 60S ribosomal protein L24, putative O.I. H.G. S.X.
0.63 83.1 Ta.6114.1.S1_at At2g37990 - - 2e-2 At1g78200 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.61 82.0 Ta.14408.1.S1_at At2g37990 - - 7e-41 At5g06360 ribosomal protein S8e family protein O.I. H.G. S.X.
0.54 75.5 Ta.10501.1.S1_x_at At2g37990 - - 5e+0 At2g34740 catalytic/ protein serine/threonine phosphatase O.I. H.G. S.X.
0.53 74.9 TaAffx.114725.1.S1_at At2g37990 - - 5e-10 At5g38890 exoribonuclease-related O.I. H.G. S.X.
0.52 73.7 Ta.14197.1.S1_at At2g37990 RBP protein - 4e-5 At5g04600 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.52 73.7 Ta.14404.1.S1_x_at At2g37990 - - 9e-8 At2g36930 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.50 72.4 Ta.14538.1.S1_at At2g37990 - - 2e-12 At5g49510 PDF3 (PREFOLDIN 3) O.I. H.G. S.X.
0.48 69.0 Ta.14404.1.S1_a_at At2g37990 - - 9e-8 At2g36930 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.42 60.9 TaAffx.133775.1.A1_s_at At2g37990 - - 3e-1 At3g19130 ATRBP47B (RNA-binding protein 47B) O.I. H.G. S.X.
0.40 58.4 Ta.13801.1.S1_at At2g37990 - - 1e-11 At5g57280 methyltransferase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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