CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4647_at

Gene name
Homology with Arabidopsis Similar to At2g37990: ribosome biogenesis regulatory protein (RRS1) family protein (HF=3e-3)

Module size 6 genes

NF 0.55

%ile 76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 66.9 0.96 Contig4647_at Contig4647 - - 3e-3 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein O.I. H.G. S.X.
0.67 84.7 0.96 Contig6066_at Contig6066 - - 4e+0 At5g23640 unknown protein O.I. H.G. S.X.
0.57 74.9 0.96 Contig8299_at Contig8299 - - 3e-9 At3g20650 mRNA capping enzyme family protein O.I. H.G. S.X.
0.46 61.0 0.96 Contig4172_at Contig4172 - - 2e-2 At3g52090 NRPB11 O.I. H.G. S.X.
0.44 58.9 0.97 Contig15070_at Contig15070 - - 1e-2 At4g10810 unknown protein O.I. H.G. S.X.
0.36 47.1 0.96 Contig8629_at Contig8629 - - 3e-6 At2g17190 ubiquitin family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.9 99.8 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
16.0 99.6 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.9 98.9 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.0 97.9 GSM282029 Malting_day1_Merit_rep3 GSE11200 Expression data from malting barley seeds
5.9 97.9 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.8 97.8 GSM282028 Malting_day1_Merit_rep1 GSE11200 Expression data from malting barley seeds
5.2 97.4 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM372999 genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3 96.4 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.1 96.2 GSM372963 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.6488.1.S1_s_at, orthologous to the query gene, Contig4647_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 88.1 Ptp.6488.1.S1_s_at At2g37990 hypothetical protein - 3e-5 At2g37990 ribosome biogenesis regulatory protein (RRS1) family protein O.I. H.G. S.X.
0.67 91.1 Ptp.1858.1.S1_at At2g37990 hypothetical protein - 8e-71 At1g27770 ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) O.I. H.G. S.X.
0.61 87.0 PtpAffx.25004.5.A1_a_at At2g37990 hypothetical protein - 7e-24 At3g11200 AL2 (ALFIN-LIKE 2) O.I. H.G. S.X.
0.57 84.2 PtpAffx.210864.1.S1_s_at At2g37990 hypothetical protein - 1e-64 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) O.I. H.G. S.X.
0.57 84.2 PtpAffx.210864.1.S1_x_at At2g37990 hypothetical protein - 1e-64 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) O.I. H.G. S.X.
0.46 73.7 PtpAffx.220067.1.S1_at At2g37990 hypothetical protein - 3e-7 At1g32340 NHL8 O.I. H.G. S.X.
0.33 57.5 Ptp.6294.1.S1_a_at At2g37990 hypothetical protein - 1e-41 At5g48160 OBE2 (OBERON2) O.I. H.G. S.X.
0.26 45.2 Ptp.6439.1.S1_s_at At2g37990 hypothetical protein - 4e-54 At4g16143 IMPA-2 (IMPORTIN ALPHA ISOFORM 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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