Co-expression analysis

Gene ID	Contig4647_at
Gene name
Homology with Arabidopsis	Similar to At2g37990: ribosome biogenesis regulatory protein (RRS1) family protein (HF=3e-3)
Module size	6 genes
NF	0.55
%ile	76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.96	Contig4647_at	Contig4647	-	-	3e-3	At2g37990	ribosome biogenesis regulatory protein (RRS1) family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig6066_at	Contig6066	-	-	4e+0	At5g23640	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.96	Contig8299_at	Contig8299	-	-	3e-9	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig4172_at	Contig4172	-	-	2e-2	At3g52090	NRPB11	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig15070_at	Contig15070	-	-	1e-2	At4g10810	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig8629_at	Contig8629	-	-	3e-6	At2g17190	ubiquitin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.9	99.8	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.0	99.6	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
5.9	97.9	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.8	97.8	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.3	96.4	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.1	96.2	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C47000010_at, orthologous to the query gene, Contig4647_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	PsAffx.C47000010_at	At2g37990	-	-	5e-2	At5g43960	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	PsAffx.CL1570Contig1_at	At2g37990	-	-	5e-1	At3g24830	60S ribosomal protein L13A (RPL13aB)	O.I.	H.G.	S.X.	Please select
0.60	80.7	PsAffx.C22000090_at	At2g37990	-	-	3e-2	At5g55690	MADS-box protein (AGL47)	O.I.	H.G.	S.X.	Please select
0.55	76.3	PsAffx.C143000013_at	At2g37990	-	-	2e+0	At5g49800	-	O.I.	H.G.	S.X.	Please select
0.53	74.2	PsAffx.C338000008_at	At2g37990	-	-	3e+0	At5g58540	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	PsAffx.psMA013xP16f_at	At2g37990	-	-	3e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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