Co-expression analysis

Gene ID Contig4647_at
Gene name
Homology with ArabidopsisSimilar to At2g37990: ribosome biogenesis regulatory protein (RRS1) family protein (HF=3e-3)
Module size 6 genes
NF 0.55
%ile 76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.96Contig4647_atContig4647--3e-3At2g37990ribosome biogenesis regulatory protein (RRS1) family proteinO.I.H.G.S.X.
0.6784.70.96Contig6066_atContig6066--4e+0At5g23640unknown proteinO.I.H.G.S.X.
0.5774.90.96Contig8299_atContig8299--3e-9At3g20650mRNA capping enzyme family proteinO.I.H.G.S.X.
0.4661.00.96Contig4172_atContig4172--2e-2At3g52090NRPB11O.I.H.G.S.X.
0.4458.90.97Contig15070_atContig15070--1e-2At4g10810unknown proteinO.I.H.G.S.X.
0.3647.10.96Contig8629_atContig8629--3e-6At2g17190ubiquitin family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.999.8GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
16.099.6GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.998.9GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.097.9GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
5.997.9GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.897.8GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.297.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.097.2GSM372999genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.396.4GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.196.2GSM372963genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g37990, orthologous to the query gene, Contig4647_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.6781.6At2g37990818377ribosome biogenesis regulatory protein (RRS1) family proteinF:unknown;P:ribosome biogenesis;C:nucleolus;MFOPBO.I.H.G.S.X.
0.6781.6At3g57000824867nucleolar essential protein-relatedF:molecular_function unknown;P:unknown;C:nucleus;MOFAPBVO.I.H.G.S.X.
0.5065.3At4g28450828962nucleotide binding / protein bindingThis gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseO.I.H.G.S.X.
0.4457.2At3g62940825469OTU-like cysteine protease family proteinF:cysteine-type peptidase activity;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.H.G.S.X.
0.4050.8At3g18600821391DEAD/DEAH box helicase, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus;BOMFPAVO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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