Co-expression analysis

Gene ID Contig4641_s_at
Gene name
Homology with ArabidopsisSimilar to At4g00810: 60S acidic ribosomal protein P1 (RPP1B) (HF=2e-3)
Module size 6 genes
NF 0.04
%ile 5.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.00.84Contig4641_s_atContig4641--2e-3At4g0081060S acidic ribosomal protein P1 (RPP1B)O.I.H.G.S.X.
0.097.40.90Contig21216_atContig21216--2e+0At3g12760-O.I.H.G.S.X.
0.054.10.88HA28N15r_x_atHA28N15r--3e-22At5g59690histone H4O.I.H.G.S.X.
0.043.40.90Contig18016_atContig18016--2e+0At4g19350EMB3006 (embryo defective 3006)O.I.H.G.S.X.
0.021.80.90HV_CEa0009K11r2_atHV_CEa0009K11r2--3e+0At4g23010UDP-galactose transporter-relatedO.I.H.G.S.X.
0.021.80.90HVSMEl0006A12r2_atHVSMEl0006A12r2--2e+0At5g57450XRCC3O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.398.8GSM419981Seed_Rep1GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
8.398.8GSM440975Control seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
6.698.2GSM440980Stressed seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.597.6GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.097.2GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
5.097.2GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.796.9GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.796.9GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.596.7GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.296.3GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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