Co-expression analysis

Gene ID	Contig4608_at
Gene name
Homology with Arabidopsis	Similar to At1g12840: DET3 (DE-ETIOLATED 3) (HF=3e-9)
Module size	7 genes
NF	0.26
%ile	33.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	0.94	Contig4608_at	Contig4608	-	-	3e-9	At1g12840	DET3 (DE-ETIOLATED 3)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.95	Contig20086_s_at	Contig20086	-	-	1e+0	At5g57570	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig13204_at	Contig13204	-	-	6e-1	At2g03570	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig9680_at	Contig9680	-	-	6e-2	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig10432_at	Contig10432	-	-	2e-29	At3g60750	transketolase, putative	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.94	Contig10300_at	Contig10300	-	-	4e-2	At4g21740	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	99.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.7	96.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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