Co-expression analysis

Gene ID Contig4592_s_at
Gene name
Homology with ArabidopsisSimilar to At4g23650: CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) (HF=3e-22)
Module size 6 genes
NF 0.70
%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig4592_s_atContig4592--3e-22At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.
0.6784.70.96Contig5342_atContig5342--4e-3At3g56150EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)O.I.H.G.S.X.
0.6077.30.96Contig3856_atContig3856--1e-19At1g52600signal peptidase, putativeO.I.H.G.S.X.
0.5572.00.96Contig4662_atContig4662--1e-16At1g61700DNA-directed RNA polymerase II, putative (RPB10)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.895.7GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
3.795.5GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
3.595.1GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
3.595.1GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.194.1GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.194.1GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.093.8GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
2.792.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.591.9GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.591.9GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

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