Co-expression analysis

Gene ID	Contig4563_at
Gene name
Homology with Arabidopsis	Similar to At3g17240: mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) (HF=5e-15)
Module size	6 genes
NF	0.66
%ile	88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Contig2826_s_at	Contig2826	-	-	1e-21	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig4302_at	Contig4302	-	-	8e-2	At5g48640	cyclin family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig2986_at	Contig2986	-	-	1e-39	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.97	Contig5778_at	Contig5778	-	-	2e-10	At4g22260	IM (IMMUTANS)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.97	Contig3961_at	Contig3961	-	-	1e+0	At3g29560	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.3	90.9	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
2.1	89.7	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
2.1	89.7	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.1	89.7	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
2.0	89.0	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
2.0	89.0	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
1.9	88.2	GSM261031	Dicktoo-control-rep2	GSE10329	Low temperature stress in cv. Dicktoo
1.9	88.2	GSM130799	control, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
1.8	87.4	GSM130801	salinity stress, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
1.8	87.4	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the soybean gene, Gma.8428.1.S1_at, orthologous to the query gene, Contig4563_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	Gma.8428.1.S1_at	At3g17240	ferric leghemoglobin reductase	-	4e-52	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.26088.1.S1_at	At3g17240	-	-	1e-13	At3g55410	2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.10761.1.S1_x_at	At3g17240	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.10761.1.S1_at	At3g17240	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.17	21.2	Gma.6150.2.S1_x_at	At3g17240	-	-	1e-23	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.05	8.0	Gma.437.1.S1_s_at	At3g17240	Profilin, PRO2	-	1e-10	At2g19760	PRF1 (PROFILIN 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage