CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4563_at

Gene name
Homology with Arabidopsis Similar to At3g17240: mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) (HF=5e-15)

Module size 6 genes

NF 0.66

%ile 88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.98 Contig4563_at Contig4563 - - 5e-15 At3g17240 mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) O.I. H.G. S.X.
0.77 90.8 0.97 Contig2826_s_at Contig2826 - - 1e-21 At3g44110 ATJ3 O.I. H.G. S.X.
0.67 84.7 0.97 Contig4302_at Contig4302 - - 8e-2 At5g48640 cyclin family protein O.I. H.G. S.X.
0.67 84.7 0.98 Contig2986_at Contig2986 - - 1e-39 At3g28710 H+-transporting two-sector ATPase, putative O.I. H.G. S.X.
0.46 61.0 0.97 Contig5778_at Contig5778 - - 2e-10 At4g22260 IM (IMMUTANS) O.I. H.G. S.X.
0.38 49.5 0.97 Contig3961_at Contig3961 - - 1e+0 At3g29560 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.3 90.9 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
2.1 89.7 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
2.1 89.7 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
2.1 89.7 GSM161200 cold treatment rep1 GSE6993 Barley low temperature stress
2.0 89.0 GSM161221 cold treatment rep3 GSE6993 Barley low temperature stress
2.0 89.0 GSM130802 salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
1.9 88.2 GSM261031 Dicktoo-control-rep2 GSE10329 Low temperature stress in cv. Dicktoo
1.9 88.2 GSM130799 control, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
1.8 87.4 GSM130801 salinity stress, biological rep1 GSE5605 Expression data from barley under salinity stress and JA treatment
1.8 87.4 GSM440962 Stressed lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g17240, orthologous to the query gene, Contig4563_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.63 78.1 At3g17240 820984 mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) lipoamide dehydrogenase precursor O.I. H.G. S.X.
0.61 76.7 At4g35260 829679 IDH1 (ISOCITRATE DEHYDROGENASE 1) NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1) O.I. H.G. S.X.
0.50 65.3 At2g36530 818226 LOS2 Involved in light-dependent cold tolerance and encodes an enolase. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. H.G. S.X.
0.50 65.3 At3g52930 824459 fructose-bisphosphate aldolase, putative F:fructose-bisphosphate aldolase activity, catalytic activity;P:response to cadmium ion, response to salt stress, pentose-phosphate shunt;C:in 7 components;OMBPF O.I. H.G. S.X.
0.50 65.3 At5g03290 831884 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative F:isocitrate dehydrogenase (NAD+) activity, ATP binding;P:tricarboxylic acid cycle, metabolic process;C:mitochondrion, chloroplast;BOMFAP O.I. H.G. S.X.
0.48 62.5 At1g79550 844293 PGK (PHOSPHOGLYCERATE KINASE) Encodes cytosolic phosphoglycerate kinase (PGK). O.I. H.G. S.X.
0.36 43.6 At5g50850 835157 MAB1 (MACCI-BOU) F:pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity;P:defense response to bacterium;C:mitochondrion, nucleolus, plasma membrane;BOMPFA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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