Co-expression analysis

Gene ID	Contig4561_at
Gene name
Homology with Arabidopsis	Similar to At5g58290: RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) (HF=2e-69)
Module size	6 genes
NF	0.82
%ile	97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.95	Contig4561_at	Contig4561	-	-	2e-69	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.95	Contig4560_x_at	Contig4560	-	-	2e-1	At1g29000	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.94	Contig3871_at	Contig3871	-	-	3e-41	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.95	HK05B20r_s_at	HK05B20r	-	-	1e+0	At1g27000	bZIP family transcription factor	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig15199_at	Contig15199	-	-	4e+0	At2g40150	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig19727_at	Contig19727	-	-	1e+0	At5g51790	basix helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.3	97.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.206030.1.S1_at, orthologous to the query gene, Contig4561_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.206030.1.S1_at	At5g58290	hypothetical protein	-	4e-166	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.209173.1.S1_at	At5g58290	hypothetical protein	-	5e-92	At3g19820	DWF1 (DWARF 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.208156.1.S1_at	At5g58290	hypothetical protein	-	3e-3	At3g22480	prefoldin-related KE2 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.44424.1.A1_at	At5g58290	-	-	2e+0	At3g13224	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.20117.2.A1_at	At5g58290	hypothetical protein	-	4e-19	At3g15980	coatomer protein complex, subunit beta 2 (beta prime), putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.374.3.A1_a_at	At5g58290	-	-	4e-4	At1g77840	eukaryotic translation initiation factor 5, putative / eIF-5, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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