Co-expression analysis

Gene ID Contig4526_s_at
Gene name
Homology with ArabidopsisSimilar to At3g26760: short-chain dehydrogenase/reductase (SDR) family protein (HF=1e-1)
Module size 19 genes
NF 0.27
%ile 35.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7891.20.65Contig4526_s_atContig4526--1e-1At3g26760short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5774.90.85Contig16442_atContig16442--1e+0At2g14850unknown proteinO.I.H.G.S.X.
0.5369.70.81Contig18017_atContig18017--1e+0At1g58265cytochrome P450-relatedO.I.H.G.S.X.
0.4963.70.84EBma03_SQ003_L14_s_atEBma03_SQ003_L14--1e+1At5g21110unknown proteinO.I.H.G.S.X.
0.4661.00.86Contig10392_atContig10392--1e-13At1g16820vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-relatedO.I.H.G.S.X.
0.4661.00.87Contig10250_s_atContig10250--2e-5At1g04950TAF6 (TBP-ASSOCIATED FACTOR 6)O.I.H.G.S.X.
0.4356.40.83Contig3835_atContig3835--9e-20At5g25560zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4255.20.78EBpi07_SQ001_B14_s_atEBpi07_SQ001_B14--2e+0At3g27520unknown proteinO.I.H.G.S.X.
0.4053.10.87Contig13057_atContig13057--2e+1At5g20060phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.3647.10.82Contig3315_atContig3315--1e+0At3g14190unknown proteinO.I.H.G.S.X.
0.3545.10.84S0001000058H07F1_s_atS0001000058H07F1--4e+0At5g50180protein kinase, putativeO.I.H.G.S.X.
0.2835.50.81Contig10768_s_atContig10768--5e-20At4g12650-O.I.H.G.S.X.
0.2326.10.67EBma03_SQ002_F16_s_atEBma03_SQ002_F16--2e+0At1g52490-O.I.H.G.S.X.
0.2326.10.74Contig15329_atContig15329--5e-10At5g16530PIN5 (PIN-FORMED 5)O.I.H.G.S.X.
0.2122.60.88Contig18135_atContig18135--2e+0At5g67300MYBR1 (MYB DOMAIN PROTEIN R1)O.I.H.G.S.X.
0.1514.10.77Contig4527_x_atContig4527--9e+0At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.1514.10.77Contig19813_atContig19813--5e+0At3g43083LCR33 (Low-molecular-weight cysteine-rich 33)O.I.H.G.S.X.
0.119.40.78Contig7786_atContig7786--1e+0At5g19570unknown proteinO.I.H.G.S.X.
0.075.80.75HA28N02r_s_atHA28N02r--1e-8At2g23810TET8 (TETRASPANIN8)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.798.3GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.797.7GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.696.8GSM238422Endosperm 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.296.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238423Endosperm 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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