CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4499_s_at

Gene name
Homology with Arabidopsis Similar to At4g22670: AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) (HF=4e-18)

Module size 6 genes

NF 0.81

%ile 97.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.97 Contig4499_s_at Contig4499 - - 4e-18 At4g22670 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) O.I. H.G. S.X.
0.83 94.0 0.95 Contig4498_at Contig4498 - - 2e-1 At1g28290 AGP31 (arabinogalactan-protein 31) O.I. H.G. S.X.
0.77 90.8 0.93 Contig4497_at Contig4497 - - 1e-2 At1g12410 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) O.I. H.G. S.X.
0.71 87.1 0.93 Contig9656_at Contig9656 - - 1e+0 At2g41225 unknown protein O.I. H.G. S.X.
0.67 84.7 0.94 Contig4495_at Contig4495 - - 1e+0 At5g12235 CLE22 (CLAVATA3/ESR-RELATED 22) O.I. H.G. S.X.
0.61 78.7 0.93 Contig21078_at Contig21078 - - 6e-1 At1g77765 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.97	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.
0.83	94.0	0.95	Contig4498_at	Contig4498	-	-	2e-1	At1g28290	AGP31 (arabinogalactan-protein 31)	O.I.	H.G.	S.X.
0.77	90.8	0.93	Contig4497_at	Contig4497	-	-	1e-2	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	O.I.	H.G.	S.X.
0.71	87.1	0.93	Contig9656_at	Contig9656	-	-	1e+0	At2g41225	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.94	Contig4495_at	Contig4495	-	-	1e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.
0.61	78.7	0.93	Contig21078_at	Contig21078	-	-	6e-1	At1g77765	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.86	94.8	0.91	HT07E22u_x_at	HT07E22u	-	-	9e-1	At4g12850	far-red impaired responsive family protein / FAR1 family protein	O.I.	H.G.	S.X.
0.83	94.0	0.91	Contig17873_at	Contig17873	-	-	4e-1	At4g17490	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	O.I.	H.G.	S.X.
0.83	94.0	0.93	Contig4495_x_at	Contig4495	-	-	1e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	O.I.	H.G.	S.X.
0.80	92.5	0.90	Contig16284_at	Contig16284	-	-	2e-3	At1g36050	unknown protein	O.I.	H.G.	S.X.
0.80	92.5	0.95	Contig17872_at	Contig17872	-	-	2e+0	At3g24730	catalytic	O.I.	H.G.	S.X.
0.71	87.1	0.90	Contig25193_at	Contig25193	-	-	1e+0	Atmg00450	-	O.I.	H.G.	S.X.
0.63	80.3	0.87	Contig15100_at	Contig15100	-	-	3e+0	At5g67190	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.61	78.7	0.91	Contig8622_at	Contig8622	-	-	9e-1	At2g40085	unknown protein	O.I.	H.G.	S.X.
0.59	75.8	0.88	Contig5436_at	Contig5436	-	-	6e-1	At1g44820	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative	O.I.	H.G.	S.X.
0.59	75.8	0.88	HT05D14u_s_at	HT05D14u	-	-	2e+0	At3g21710	unknown protein	O.I.	H.G.	S.X.
0.57	74.9	0.85	Contig10759_at	Contig10759	-	-	7e-1	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	O.I.	H.G.	S.X.
0.56	74.3	0.81	Contig3670_at	Contig3670	-	-	2e+0	At1g05430	unknown protein	O.I.	H.G.	S.X.
0.52	68.3	0.78	EBro02_SQ005_I23_at	EBro02_SQ005_I23	-	-	4e+0	Atmg00890	-	O.I.	H.G.	S.X.
0.50	66.9	0.81	EBem10_SQ002_I10_s_at	EBem10_SQ002_I10	m12 protein	-	8e+0	At3g59460	-	O.I.	H.G.	S.X.
0.50	66.9	0.85	Contig12336_at	Contig12336	-	-	8e-5	At3g22240	unknown protein	O.I.	H.G.	S.X.
0.47	62.2	0.84	Contig1075_at	Contig1075	-	-	7e+0	At4g36500	unknown protein	O.I.	H.G.	S.X.
0.46	61.0	0.89	Contig19426_at	Contig19426	-	-	2e-1	At3g27400	pectate lyase family protein	O.I.	H.G.	S.X.
0.46	61.0	0.83	Contig2795_s_at	Contig2795	-	-	1e-23	At3g04830	binding	O.I.	H.G.	S.X.
0.44	58.9	0.87	HU12N23u_s_at	HU12N23u	-	-	5e-1	At1g45145	ATTRX5	O.I.	H.G.	S.X.
0.44	58.9	0.87	Contig5940_s_at	Contig5940	-	-	9e-12	At1g65560	allyl alcohol dehydrogenase, putative	O.I.	H.G.	S.X.
0.44	58.9	0.89	HVSMEl0023K24r2_at	HVSMEl0023K24r2	-	-	4e+0	At4g09647	-	O.I.	H.G.	S.X.
0.43	56.4	0.90	Contig5026_at	Contig5026	-	-	3e-4	At1g51400	photosystem II 5 kD protein	O.I.	H.G.	S.X.
0.42	55.2	0.86	HS07I12u_s_at	HS07I12u	-	-	3e+0	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.
0.40	53.1	0.74	Contig6940_at	Contig6940	-	-	5e-1	At4g37450	AGP18 (ARABINOGALACTAN PROTEIN 18)	O.I.	H.G.	S.X.
0.36	47.1	0.79	HVSMEl0003B06r2_at	HVSMEl0003B06r2	-	-	1e+0	At4g01580	transcriptional factor B3 family protein	O.I.	H.G.	S.X.
0.36	47.1	0.83	Contig15922_at	Contig15922	-	-	6e-10	At2g01070	-	O.I.	H.G.	S.X.
0.36	47.1	0.90	Contig10866_at	Contig10866	-	-	3e-1	At3g19810	unknown protein	O.I.	H.G.	S.X.
0.35	45.1	0.81	HS18K19u_s_at	HS18K19u	m12 protein	-	3e+0	At1g80670	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.34	43.6	0.80	HVSMEl0002F13r2_x_at	HVSMEl0002F13r2	-	-	3e-1	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	O.I.	H.G.	S.X.
0.34	43.6	0.83	X87690_s_at	X87690	m12 protein	-	1e-15	At4g26930	MYB97 (myb domain protein 97)	O.I.	H.G.	S.X.
0.33	42.6	0.82	Contig4786_at	Contig4786	-	-	4e-5	At5g50690	AtHSD7 (hydroxysteroid dehydrogenase 7)	O.I.	H.G.	S.X.
0.31	38.6	0.91	Contig24818_at	Contig24818	-	-	5e-9	At3g18090	NRPD2b	O.I.	H.G.	S.X.
0.30	37.0	0.75	Contig12196_at	Contig12196	-	-	2e-2	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.29	35.5	0.74	Contig13907_at	Contig13907	-	-	2e+0	At4g34290	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.
0.29	35.5	0.77	Contig1671_s_at	Contig1671	-	-	1e+0	At5g20290	40S ribosomal protein S8 (RPS8A)	O.I.	H.G.	S.X.
0.27	32.1	0.77	Contig13647_at	Contig13647	-	-	1e+0	At1g72310	ATL3	O.I.	H.G.	S.X.
0.26	30.4	0.86	Contig1403_at	Contig1403	-	-	1e-2	At3g26430	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.
0.25	28.9	0.75	Contig12084_at	Contig12084	-	-	6e-3	At4g21740	unknown protein	O.I.	H.G.	S.X.
0.25	28.9	0.80	HS06C19u_s_at	HS06C19u	-	-	3e+0	Atmg00320	-	O.I.	H.G.	S.X.
0.25	28.9	0.82	Contig11685_at	Contig11685	-	-	1e-1	At1g80390	IAA15 (INDOLE-3-ACETIC ACID INDUCIBLE 15)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.4 99.8 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
20.3 99.7 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
20.0 99.7 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
19.0 99.7 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
17.9 99.7 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
16.4 99.6 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
11.9 99.3 GSM238427 Endosperm 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.3 98.5 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.6 98.2 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.5 98.2 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
23.4	99.8	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
20.3	99.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
20.0	99.7	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
19.0	99.7	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
17.9	99.7	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
16.4	99.6	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
11.9	99.3	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig4499_s_at
Gene name
Homology with Arabidopsis	Similar to At4g22670: AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) (HF=4e-18)
Module size	6 genes
NF	0.81
%ile	97.1

Co-expression analysis

Gene ID Contig4499_s_at Gene name Homology with ArabidopsisSimilar to At4g22670: AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) (HF=4e-18) Module size 6 genes NF 0.81 %ile 97.1

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig4499_s_at

Gene name
Homology with Arabidopsis Similar to At4g22670: AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) (HF=4e-18)

Module size 6 genes

NF 0.81

%ile 97.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays