Co-expression analysis

Gene ID Contig4499_s_at
Gene name
Homology with ArabidopsisSimilar to At4g22670: AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) (HF=4e-18)
Module size 6 genes
NF 0.81
%ile 97.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig4499_s_atContig4499--4e-18At4g22670AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)O.I.H.G.S.X.
0.8394.00.95Contig4498_atContig4498--2e-1At1g28290AGP31 (arabinogalactan-protein 31)O.I.H.G.S.X.
0.7790.80.93Contig4497_atContig4497--1e-2At1g12410CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)O.I.H.G.S.X.
0.7187.10.93Contig9656_atContig9656--1e+0At2g41225unknown proteinO.I.H.G.S.X.
0.6784.70.94Contig4495_atContig4495--1e+0At5g12235CLE22 (CLAVATA3/ESR-RELATED 22)O.I.H.G.S.X.
0.6178.70.93Contig21078_atContig21078--6e-1At1g77765unknown proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.499.8GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
20.399.7GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
20.099.7GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
19.099.7GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
17.999.7GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
16.499.6GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
11.999.3GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.398.5GSM238425Endosperm 48 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.698.2GSM238424Endosperm 48 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g22670, orthologous to the query gene, Contig4499_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At4g22670828363AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)F:binding;P:response to cadmium ion;C:unknown;MBOPFVAO.I.H.G.S.X.
0.4862.5At1g22920838899CSN5A (COP9 SIGNALOSOME 5A)AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype.O.I.H.G.S.X.
0.4457.2At2g43770818980transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOBPAVO.I.H.G.S.X.
0.4253.9At5g52470835323FIB1 (FIBRILLARIN 1)encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.O.I.H.G.S.X.
0.4152.4At5g05000830382TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)Outer membrane protein that may function in import of nuclear encoded proteins into the chloroplast.O.I.H.G.S.X.
0.4152.4At4g39280830084phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putativeF:phenylalanine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMAFPO.I.H.G.S.X.
0.4050.8At1g243608390533-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductaseF:3-oxoacyl-[acyl-carrier-protein] reductase activity;P:metabolic process, fatty acid biosynthetic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOMFPAVO.I.H.G.S.X.
0.3948.4At4g24940828596SAE1A (SUMO-ACTIVATING ENZYME 1A)Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.O.I.H.G.S.X.
0.3948.4At3g15010820730RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:nucleolus;MBPOFVAO.I.H.G.S.X.
0.3948.4At1g34130840312STT3B (staurosporin and temperature sensitive 3-like b)Encodes homolog of yeast STT3, a subunit of oligosaccharyltransferase.O.I.H.G.S.X.
0.3846.7At4g26900828797AT-HF (HIS HF)encodes a glutamine amidotransferase and cyclase, catalyzes the fifth and sixth steps of the histidine biosynthetic pathwayO.I.H.G.S.X.
0.3846.7At1g56070842058LOS1encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive.O.I.H.G.S.X.
0.3643.6At5g48030834854GFA2 (GAMETOPHYTIC FACTOR 2)encodes a mitochondrially targeted DNAJ protein involved in female gametophyte development.O.I.H.G.S.X.
0.3541.6At5g27470832806seryl-tRNA synthetase / serine--tRNA ligaseF:serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, seryl-tRNA aminoacylation;C:cytosol;OBMFAPO.I.H.G.S.X.
0.3439.8At5g23880832453CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus.O.I.H.G.S.X.
0.3338.1At3g0963082012060S ribosomal protein L4/L1 (RPL4A)F:structural constituent of ribosome;P:translation;C:in 9 components;MOAFPBO.I.H.G.S.X.
0.3338.1At3g58610825030ketol-acid reductoisomeraseF:coenzyme binding, oxidoreductase activity, binding, ketol-acid reductoisomerase activity, catalytic activity;P:response to cadmium ion, branched chain family amino acid biosynthetic process;C:in 6 components;BOFAPO.I.H.G.S.X.
0.3338.1At4g26300828736emb1027 (embryo defective 1027)F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPVO.I.H.G.S.X.
0.3338.1At5g0287083175660S ribosomal protein L4/L1 (RPL4D)F:structural constituent of ribosome;P:translation;C:in 8 components;MOAFPBO.I.H.G.S.X.
0.3338.1At1g10840837627TIF3H1Encodes eukaryotic initiation factor 3H1 subunit (TIF3H1).O.I.H.G.S.X.
0.3338.1At2g16800816181high-affinity nickel-transport family proteinF:nickel ion transmembrane transporter activity, metal ion binding;P:nickel ion transport, metal ion transport;C:integral to membrane, chloroplast;OBPAO.I.H.G.S.X.
0.3235.7At3g60830825254ATARP7 (ACTIN-RELATED PROTEIN 7)Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission.O.I.H.G.S.X.
0.3235.7At3g02530821160chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:response to cadmium ion;C:membrane, cytoplasm;BOMFPAO.I.H.G.S.X.
0.3235.7At3g2483082208160S ribosomal protein L13A (RPL13aB)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane;OMBAPFO.I.H.G.S.X.
0.3235.7At5g2029083215140S ribosomal protein S8 (RPS8A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 8 components;MAOFPO.I.H.G.S.X.
0.3235.7At3g14290820649PAE2Encodes 20S proteasome subunit PAE2 (PAE2).O.I.H.G.S.X.
0.3235.7At4g31180829246aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putativeF:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:response to cadmium ion, aspartyl-tRNA aminoacylation;C:chloroplast, cytoplasm;BOMFAPO.I.H.G.S.X.
0.3133.8At2g0125081465260S ribosomal protein L7 (RPL7B)F:structural constituent of ribosome, transcription regulator activity;P:translation;C:in 8 components;MOFAPO.I.H.G.S.X.
0.3133.8At1g64520842760RPN12a (Regulatory Particle non-ATPase 12a)F:peptidase activity;P:in 14 processes;C:proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, chloroplast envelope;MFOPO.I.H.G.S.X.
0.3133.8At3g57610824930ADSS (ADENYLOSUCCINATE SYNTHASE)encoding adenylosuccinate synthetase (AdSS), the enzyme involved in the first step of the formation of the purine nucleotide AMP (conversion of IMP to adenylo-succinate)O.I.H.G.S.X.
0.3133.8At3g57290824896EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. eIF3e appears to be subjected to proteasome-dependent degradation that requires the PCI domain of eIF3e. The level of eIF3e present in cells appears to affect the rate of translation.O.I.H.G.S.X.
0.3032.1At3g0920082007660S acidic ribosomal protein P0 (RPP0B)F:structural constituent of ribosome;P:translational elongation, response to salt stress, response to cold, translation;C:in 7 components;MOAFPBO.I.H.G.S.X.
0.3032.1At5g43010834316RPT4A26S proteasome AAA-ATPase subunit RPT4a (RPT4a) mRNA,O.I.H.G.S.X.
0.3032.1At5g11170830986ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:response to cadmium ion;C:nucleolus;BOMFPAVO.I.H.G.S.X.
0.3032.1At2g43630818965-F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, nucleus, chloroplast envelope;PMBVOO.I.H.G.S.X.
0.3032.1At4g39520830106GTP-binding protein, putativeF:GTP binding;P:unknown;C:intracellular;BOMAFPO.I.H.G.S.X.
0.3032.1At5g3553083351840S ribosomal protein S3 (RPS3C)F:structural constituent of ribosome;P:response to salt stress, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;BOMAPFO.I.H.G.S.X.
0.2930.3At1g24510839066T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:plasma membrane;BOMFPAO.I.H.G.S.X.
0.2930.3At1g14320837993SAC52 (SUPPRESSOR OF ACAULIS 52)Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.O.I.H.G.S.X.
0.2930.3At1g02780839407emb2386 (embryo defective 2386)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation, ribosome biogenesis;C:in 6 components;MAOFPO.I.H.G.S.X.
0.2930.3At5g10360830900EMB3010 (embryo defective 3010)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane;MAOFPO.I.H.G.S.X.
0.2930.3At1g09640837491elongation factor 1B-gamma, putative / eEF-1B gamma, putativeF:translation elongation factor activity;P:translational elongation;C:plasma membrane;BMOPFAO.I.H.G.S.X.
0.2930.3At3g07300819918eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPO.I.H.G.S.X.
0.2930.3At4g26310828737elongation factor P (EF-P) family proteinF:translation elongation factor activity;P:translational elongation;C:unknown;BOPAO.I.H.G.S.X.
0.2930.3At5g20920832216EIF2 BETAprotein synthesis initiation factor eIF2 betaO.I.H.G.S.X.
0.2930.3At5g09900830850EMB2107 (EMBRYO DEFECTIVE 2107)Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects.O.I.H.G.S.X.
0.2930.3At5g1520083137240S ribosomal protein S9 (RPS9B)F:structural constituent of ribosome;P:translation;C:in 7 components;POMBFAO.I.H.G.S.X.
0.2830.3At2g26590817200adhesion regulating molecule familyF:molecular_function unknown;P:cell adhesion;C:integral to membrane, nucleus, cytoplasm;MOFPO.I.H.G.S.X.
0.2830.3At4g2709082881760S ribosomal protein L14 (RPL14B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:in 8 components;MOFPAO.I.H.G.S.X.
0.2830.3At5g49510835011PDF3 (PREFOLDIN 3)F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPO.I.H.G.S.X.
0.2830.3At3g19760821513eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus, nucleus, membrane;BOMFPAVO.I.H.G.S.X.
0.2830.3At2g16930816196ribosomal protein L27 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOMFPO.I.H.G.S.X.
0.2830.3At3g49010824062ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).O.I.H.G.S.X.
0.2726.2At1g04510839503transducin family protein / WD-40 repeat family proteinF:ubiquitin-protein ligase activity, nucleotide binding;P:response to cadmium ion;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOBPAO.I.H.G.S.X.
0.2726.2At3g51010824265unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;PO.I.H.G.S.X.
0.2726.2At4g25550828660protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.2726.2At1g69620843298RPL34 (RIBOSOMAL PROTEIN L34)putative 60S ribosomal protein L34O.I.H.G.S.X.
0.2726.2At4g33250829461EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)Encodes initiation factor 3k (EIF3k).O.I.H.G.S.X.
0.2726.2At5g40770834077ATPHB3 (PROHIBITIN 3)prohibitin 3O.I.H.G.S.X.
0.2624.4At1g26460839187pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POFMO.I.H.G.S.X.
0.2624.4At1g16870838258mitochondrial 28S ribosomal protein S29-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.2624.4At3g6077082524840S ribosomal protein S13 (RPS13A)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, cell wall, chloroplast;MOAFPO.I.H.G.S.X.
0.2624.4At5g64200836541ATSC35encodes an SC35-like splicing factor of 35 kD localized to the nuclear specks.O.I.H.G.S.X.
0.2624.4At4g09320826515NDPK1nucleoside diphosphate kinase type 1 (NDPK1) gene, completeO.I.H.G.S.X.
0.2624.4At1g0448083951160S ribosomal protein L23 (RPL23A)F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOPMAFO.I.H.G.S.X.
0.2624.4At1g1593083816340S ribosomal protein S12 (RPS12A)F:structural constituent of ribosome;P:response to cadmium ion, response to salt stress, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome;MAOFPO.I.H.G.S.X.
0.2420.7At5g20890832213chaperonin, putativeF:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:anchored to plasma membrane, cell wall;BOMFPAO.I.H.G.S.X.
0.2420.7At2g29080817456ftsh3 (FtsH protease 3)encodes an FtsH protease that is localized to the mitochondrionO.I.H.G.S.X.
0.2319.3At2g25570817096bindingF:binding;P:biological_process unknown;C:unknown;BOMPVFO.I.H.G.S.X.
0.2319.3At3g0556081972260S ribosomal protein L22-2 (RPL22B)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, nucleolus, plasma membrane;MFOPO.I.H.G.S.X.
0.2217.5At3g59990825169MAP2B (METHIONINE AMINOPEPTIDASE 2B)Encodes a MAP2 like methionine aminopeptidaseO.I.H.G.S.X.
0.2217.5At5g19690832089STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)encodes an oligosaccharyl transferase involved response to high salt. Mutants are hypersensitive to high salt conditionsO.I.H.G.S.X.
0.2115.8At1g74230843763GR-RBP5 (glycine-rich RNA-binding protein 5)encodes a glycine-rich RNA binding protein.O.I.H.G.S.X.
0.2115.8At5g10840830951endomembrane protein 70, putativeF:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall;MPOFBO.I.H.G.S.X.
0.1912.7At3g60820825253PBF1Encodes 20S proteasome beta subunit PBF1 (PBF1).O.I.H.G.S.X.
0.1811.4At1g65270842834unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane;MPOO.I.H.G.S.X.
0.157.8At2g01060814630myb family transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;POBO.I.H.G.S.X.
0.135.8At1g55150841958DEAD box RNA helicase, putative (RH20)F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.103.4At5g43940834417HOT5 (sensitive to hot temperatures 5)Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility.O.I.H.G.S.X.

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