Co-expression analysis

Gene ID	Contig4494_s_at
Gene name
Homology with Arabidopsis	Similar to At5g55508: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.80
%ile	96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.97	Contig4494_s_at	Contig4494	-	-	5e+0	At5g55508	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.97	Contig5242_at	Contig5242	-	-	3e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.97	HA28J12r_s_at	HA28J12r	-	-	1e+0	At3g23255	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Contig5574_at	Contig5574	-	-	2e-11	At4g30210	ATR2 (ARABIDOPSIS P450 REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.97	Contig8436_s_at	Contig8436	-	-	7e-2	At5g40950	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.97	Contig3963_s_at	Contig3963	-	-	7e-39	At4g19210	ATRLI2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	99.5	GSM372970	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.2	99.5	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
11.2	99.2	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.7	98.6	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.6	98.6	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.6	98.6	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
6.6	98.2	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.6	98.2	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.2	98.0	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

A co-expression module including the grape gene, 1613505_at, orthologous to the query gene, Contig4494_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1613505_at	At5g55508	-	-	6e+0	At5g58900	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.01	2.1	1614367_at	At5g55508	-	-	7e+0	At5g42410	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	1610359_at	At5g55508	hypothetical protein LOC100265601	-	8e-31	At3g56050	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	1606436_s_at	At5g55508	hypothetical protein LOC100243286	-	7e-4	At4g30430	TET9 (TETRASPANIN9)	O.I.	H.G.	S.X.	Please select
0.01	2.1	1614949_x_at	At5g55508	-	-	3e-3	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	O.I.	H.G.	S.X.	Please select
0.01	2.1	1612117_at	At5g55508	hypothetical protein LOC100258476	-	2e-33	At1g01650	aspartic-type endopeptidase/ peptidase	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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