Co-expression analysis

Gene ID	Contig4494_s_at
Gene name
Homology with Arabidopsis	Similar to At5g55508: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.80
%ile	96.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.97	Contig4494_s_at	Contig4494	-	-	5e+0	At5g55508	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.97	Contig5242_at	Contig5242	-	-	3e-1	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.97	HA28J12r_s_at	HA28J12r	-	-	1e+0	At3g23255	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Contig5574_at	Contig5574	-	-	2e-11	At4g30210	ATR2 (ARABIDOPSIS P450 REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.97	Contig8436_s_at	Contig8436	-	-	7e-2	At5g40950	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.97	Contig3963_s_at	Contig3963	-	-	7e-39	At4g19210	ATRLI2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	99.5	GSM372970	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.2	99.5	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
11.2	99.2	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.7	98.6	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
7.6	98.6	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.6	98.6	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
6.6	98.2	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.6	98.2	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.2	98.0	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.9	97.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.222055.1.S1_at, orthologous to the query gene, Contig4494_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	PtpAffx.222055.1.S1_at	At5g55508	hypothetical protein	-	2e-2	At2g30960	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.204524.1.S1_at	At5g55508	hypothetical protein	-	4e-2	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.140892.1.A1_at	At5g55508	-	-	6e-1	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.2804.1.S1_at	At5g55508	hypothetical protein	-	2e-33	At1g69070	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	Ptp.3689.1.S1_at	At5g55508	hypothetical protein	-	1e-26	At5g50210	QS (QUINOLINATE SYNTHASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	RPTR-Ptp-AF292560-1_s_at	At5g55508	-	-				O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.20330.1.A1_at	At5g55508	-	-	1e+1	At5g64650	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.29064.1.A1_at	At5g55508	-	-	1e+0	At2g15130	plant basic secretory protein (BSP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.217676.1.S1_at	At5g55508	hypothetical protein	-	7e-1	At5g62360	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.123076.1.A1_at	At5g55508	-	-	2e+1	At2g40000	HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.20153.3.S1_at	At5g55508	hypothetical protein	-	1e-18	At2g44530	ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.214163.1.S1_at	At5g55508	hypothetical protein	-	2e+0	At5g56070	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	Ptp.5628.3.S1_at	At5g55508	hypothetical protein	-	3e-7	At5g11500	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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