Co-expression analysis

Gene ID	Contig4486_at
Gene name
Homology with Arabidopsis	Similar to At5g16470: zinc finger (C2H2 type) family protein (HF=4e-1)
Module size	7 genes
NF	0.43
%ile	59.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.8	0.93	Contig4486_at	Contig4486	-	-	4e-1	At5g16470	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.94	Contig2053_at	Contig2053	-	-	5e+0	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	HF13G03r_at	HF13G03r	-	-	4e+0	At2g30020	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.94	Contig1012_s_at	Contig1012	-	-	2e-43	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	Contig9330_at	Contig9330	-	-	5e-2	At5g41190	-	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.94	Contig12867_at	Contig12867	-	-	9e-41	At1g34430	EMB3003 (embryo defective 3003)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	Contig4672_at	Contig4672	-	-	4e-71	At5g10840	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
34.0	99.9	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
13.1	99.4	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.9	98.9	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.4	98.8	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.1	98.7	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.1	98.7	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
7.6	98.6	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.6	98.6	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
6.9	98.3	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.6	98.2	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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