Co-expression analysis

Gene ID Contig4476_at
Gene name
Homology with ArabidopsisSimilar to At5g63620: oxidoreductase, zinc-binding dehydrogenase family protein (HF=7e-26)
Module size 6 genes
NF 0.57
%ile 79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.96Contig4476_atContig4476--7e-26At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.8092.50.96Contig12065_atContig12065--1e+0At5g61670-O.I.H.G.S.X.
0.6784.70.96HVSMEg0015I15r2_atHVSMEg0015I15r2--1e-6At3g48890ATMP2O.I.H.G.S.X.
0.6178.70.96Contig6946_atContig6946--1e-5At5g01200myb family transcription factorO.I.H.G.S.X.
0.5572.00.96Contig6329_atContig6329--3e-31At2g40490HEME2O.I.H.G.S.X.
0.2021.10.96Contig7725_atContig7725--8e-1At1g22180SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6178.70.95Contig7507_atContig7507--4e-1At5g19810proline-rich extensin-like family proteinO.I.H.G.S.X.
0.6077.30.94Contig13665_atContig13665--2e+0At4g18850unknown proteinO.I.H.G.S.X.
0.5369.70.95Contig20334_atContig20334--4e+0At1g09760U2A' (U2 small nuclear ribonucleoprotein A)O.I.H.G.S.X.
0.5066.90.95Contig3970_atContig3970--2e-3At3g55460SCL30O.I.H.G.S.X.
0.5066.90.95Contig5333_s_atContig5333--4e-1At5g62720integral membrane HPP family proteinO.I.H.G.S.X.
0.4661.00.96Contig6456_s_atContig6456--4e+0At3g16120dynein light chain, putativeO.I.H.G.S.X.
0.4053.10.93Contig13978_atContig13978--1e-1At1g31660-O.I.H.G.S.X.
0.4053.10.95Contig15092_atContig15092--1e-6At2g40980-O.I.H.G.S.X.
0.4053.10.95Contig10034_atContig10034--2e-4At1g32780alcohol dehydrogenase, putativeO.I.H.G.S.X.
0.4053.10.95Contig4868_atContig4868--6e-25At2g36060ubiquitin-conjugating enzyme family proteinO.I.H.G.S.X.
0.4053.10.96Contig10471_atContig10471--2e+0At4g29030glycine-rich proteinO.I.H.G.S.X.
0.4053.10.96Contig7149_atContig7149--7e-1At1g04690KAB1 (POTASSIUM CHANNEL BETA SUBUNIT)O.I.H.G.S.X.
0.3647.10.96Contig8693_atContig8693--2e-1At1g65540calcium-binding EF hand family proteinO.I.H.G.S.X.
0.3545.10.96Contig8876_atContig8876--2e+0At3g25577unknown proteinO.I.H.G.S.X.
0.3342.60.93Contig8392_atContig8392--1e-17At5g03430phosphoadenosine phosphosulfate (PAPS) reductase family proteinO.I.H.G.S.X.
0.3342.60.93Contig12056_atContig12056--1e-1At5g38720unknown proteinO.I.H.G.S.X.
0.3342.60.94Contig3716_atContig3716--4e-2At4g37110protein binding / zinc ion bindingO.I.H.G.S.X.
0.3342.60.96Contig13114_atContig13114--1e+0At1g14450unknown proteinO.I.H.G.S.X.
0.3342.60.96Contig4469_atContig4469--4e-63At1g14400UBC1 (UBIQUITIN CARRIER PROTEIN 1)O.I.H.G.S.X.
0.3342.60.96HVSMEg0018F23r2_atHVSMEg0018F23r2--1e+0At5g15480zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.3240.30.94Contig20333_atContig20333--4e-1At2g42180unknown proteinO.I.H.G.S.X.
0.3240.30.96HT07O19u_s_atHT07O19u--2e+0At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.3138.60.95Contig11782_s_atContig11782--1e-2At5g03460unknown proteinO.I.H.G.S.X.
0.3037.00.94Contig18823_atContig18823--1e-2At3g05290PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1)O.I.H.G.S.X.
0.3037.00.95Contig4506_atContig4506--6e+0At4g02725unknown proteinO.I.H.G.S.X.
0.2935.50.93Contig8240_atContig8240--5e+0At4g12825-O.I.H.G.S.X.
0.2935.50.94Contig9406_atContig9406--5e-32At2g43945unknown proteinO.I.H.G.S.X.
0.2732.10.94Contig9169_atContig9169--9e-30At5g05580FAD8 (FATTY ACID DESATURASE 8)O.I.H.G.S.X.
0.2732.10.95Contig16700_atContig16700--3e+0At4g00467-O.I.H.G.S.X.
0.2732.10.95Contig13842_atContig13842--5e+0At2g20515unknown proteinO.I.H.G.S.X.
0.2732.10.92Contig6840_atContig6840--5e-4At1g12230transaldolase, putativeO.I.H.G.S.X.
0.2732.10.95Contig14302_atContig14302--5e+0At5g39530unknown proteinO.I.H.G.S.X.
0.2630.40.94Contig10542_atContig10542--4e+0At4g16800enoyl-CoA hydratase, putativeO.I.H.G.S.X.
0.2630.40.94Contig14421_atContig14421--1e+0At3g44240CCR4-NOT transcription complex protein, putativeO.I.H.G.S.X.
0.2528.90.92Contig2916_atContig2916UDP-D-glucuronate decarboxylase-1e-33At2g47650UXS4 (UDP-XYLOSE SYNTHASE 4)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.499.0GSM3634655 mM B(OH)3 treatment (5B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO
7.498.5GSM363461Control (C) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
5.397.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
2.893.1GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.792.7GSM36346710 mM B(OH)3 treatment (10B) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
2.792.7GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
2.692.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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