Co-expression analysis

Gene ID Contig4476_at
Gene name
Homology with ArabidopsisSimilar to At5g63620: oxidoreductase, zinc-binding dehydrogenase family protein (HF=7e-26)
Module size 6 genes
NF 0.57
%ile 79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.96Contig4476_atContig4476--7e-26At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.8092.50.96Contig12065_atContig12065--1e+0At5g61670-O.I.H.G.S.X.
0.6784.70.96HVSMEg0015I15r2_atHVSMEg0015I15r2--1e-6At3g48890ATMP2O.I.H.G.S.X.
0.6178.70.96Contig6946_atContig6946--1e-5At5g01200myb family transcription factorO.I.H.G.S.X.
0.5572.00.96Contig6329_atContig6329--3e-31At2g40490HEME2O.I.H.G.S.X.
0.2021.10.96Contig7725_atContig7725--8e-1At1g22180SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.499.0GSM3634655 mM B(OH)3 treatment (5B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO
7.498.5GSM363461Control (C) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
5.397.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
2.893.1GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.792.7GSM36346710 mM B(OH)3 treatment (10B) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
2.792.7GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
2.692.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os08g0109200, orthologous to the query gene, Contig4476_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6382.7Os08g0109200At5g63620-Zinc-containing alcohol dehydrogenase superfamilyprotein6e-11At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.5777.0Os06g0221200At5g63620-Annexin p337e-4At2g23320WRKY15O.I.H.G.S.X.
0.4051.1Os02g0244700At5g63620-Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31)(PEPCase 1) (CP21)5e-53At3g14940ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)O.I.H.G.S.X.
0.3644.0Os04g0434800At5g63620-Stromal ascorbate peroxidase9e-19At1g77490TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)O.I.H.G.S.X.
0.3644.0Os06g0142700At5g63620-Cytochrome c oxidase subunit Vb2e-15At1g80230cytochrome c oxidase family proteinO.I.H.G.S.X.
0.1915.1Os09g0293400At5g63620-Ubiquitin-conjugating enzyme E21e-10At5g56150UBC30 (ubiquitin-conjugating enzyme 30)O.I.H.G.S.X.
0.1712.6Os04g0464200At5g63620-Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH)2e-17At3g48170ALDH10A9O.I.H.G.S.X.
0.149.3Os07g0647500At5g63620-Conserved hypothetical protein3e+0At5g07950unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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