Co-expression analysis

Gene ID Contig4476_at
Gene name
Homology with ArabidopsisSimilar to At5g63620: oxidoreductase, zinc-binding dehydrogenase family protein (HF=7e-26)
Module size 6 genes
NF 0.57
%ile 79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6178.70.96Contig4476_atContig4476--7e-26At5g63620oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.8092.50.96Contig12065_atContig12065--1e+0At5g61670-O.I.H.G.S.X.
0.6784.70.96HVSMEg0015I15r2_atHVSMEg0015I15r2--1e-6At3g48890ATMP2O.I.H.G.S.X.
0.6178.70.96Contig6946_atContig6946--1e-5At5g01200myb family transcription factorO.I.H.G.S.X.
0.5572.00.96Contig6329_atContig6329--3e-31At2g40490HEME2O.I.H.G.S.X.
0.2021.10.96Contig7725_atContig7725--8e-1At1g22180SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.499.0GSM3634655 mM B(OH)3 treatment (5B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO
7.498.5GSM363461Control (C) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
5.397.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
2.893.1GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.792.7GSM36346710 mM B(OH)3 treatment (10B) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
2.792.7GSM16082319% SWC rep1GSE6990Barley drought stressLink to GEO
2.692.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g63620, orthologous to the query gene, Contig4476_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.9195.6At5g63620836482oxidoreductase, zinc-binding dehydrogenase family proteinF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:oxidation reduction, metabolic process;C:unknown;BOPFMAVO.I.H.G.S.X.
0.5673.0At4g21810828269DER2.1 (DERLIN-2.1)F:molecular_function unknown;P:proteolysis;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.4862.5At4g21450826300vesicle-associated membrane family protein / VAMP family proteinF:structural molecule activity;P:biological_process unknown;C:plasma membrane;MOFPBVO.I.H.G.S.X.
0.4659.8At2g15570816050thioredoxin M-type 3, chloroplast (TRX-M3)chloroplast protein similar to prokaryotic thioredoxin.O.I.H.G.S.X.
0.4659.8At4g33940829539zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin;C:unknown;MOPFO.I.H.G.S.X.
0.4659.8At3g06380819812ATTLP9 (TUBBY-LIKE PROTEIN 9)Member of TLP familyO.I.H.G.S.X.
0.4558.3At3g55770824743LIM domain-containing proteinF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPFO.I.H.G.S.X.
0.4457.2At1g76920844027F-box family protein (FBX3)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PO.I.H.G.S.X.
0.4355.3At2g43430818944GLX2-1 (GLYOXALASE 2-1)glyoxalase II mitochondrial isozyme (Glx2-1) mRNA, nuclearO.I.H.G.S.X.
0.4355.3At5g59960836118unknown proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;POO.I.H.G.S.X.
0.4253.9At1g16240838193SYP51 (SYNTAXIN OF PLANTS 51)Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.O.I.H.G.S.X.
0.4253.9At3g43230823398zinc finger (FYVE type) family proteinF:phosphoinositide binding, zinc ion binding;P:signal transduction;C:cellular_component unknown;MFOPBVO.I.H.G.S.X.
0.4152.4At5g18120831930ATAPRL7 (APR-like 7)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.O.I.H.G.S.X.
0.4152.4At1g06400837151ARA-2small GTP-binding protein (ara-2)O.I.H.G.S.X.
0.4050.8At4g39910830150ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3)Encodes a nuclear ubiquitin-specific protease.O.I.H.G.S.X.
0.4050.8At5g10860830953CBS domain-containing proteinF:unknown;P:response to salt stress;C:mitochondrion;BOAPFMO.I.H.G.S.X.
0.4050.8At5g18110831929NCBP (NOVEL CAP-BINDING PROTEIN)F:RNA binding, translation initiation factor activity;P:translational initiation;C:cytoplasm;MOFPO.I.H.G.S.X.
0.4050.8At1g32790840173RNA-binding protein, putativeRNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins.O.I.H.G.S.X.
0.3948.4At1g79590844297SYP52 (SYNTAXIN OF PLANTS 52)Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.O.I.H.G.S.X.
0.3846.7At5g65430836668GRF8 (GENERAL REGULATORY FACTOR 8)member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1O.I.H.G.S.X.
0.3846.7At2g21240816663BPC4 (BASIC PENTACYSTEINE 4)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMBO.I.H.G.S.X.
0.3846.7At2g45330819141emb1067 (embryo defective 1067)F:tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups;P:embryonic development ending in seed dormancy, tRNA splicing, via endonucleolytic cleavage and ligation;C:unknown;BFOMAPVO.I.H.G.S.X.
0.3846.7At5g14240831274-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.3745.0At4g39090830064RD19 (RESPONSIVE TO DEHYDRATION 19)Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R–mediated resistance response.O.I.H.G.S.X.
0.3745.0At5g22360832297ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.O.I.H.G.S.X.
0.3643.6At1g30200839900F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3541.6At5g59420836061ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)F:oxysterol binding;P:steroid metabolic process;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.3439.8At1g28200839714FIP1 (FH INTERACTING PROTEIN 1)VirF-interacting protein FIP1O.I.H.G.S.X.
0.3439.8At3g11530820326vacuolar protein sorting 55 family protein / VPS55 family proteinF:transporter activity;P:transport;C:vacuole;FMPOO.I.H.G.S.X.
0.3439.8At5g10450830909GRF6 (G-box regulating factor 6)Encodes a member of the 14-3-3 gene family that is a lambda isoform (14-3-3λ). Interacts with APX3 (ascorbate peroxidase) and AKR2 , suggesting a role in mediating oxidative metabolism in stress response. This protein was shown to colocalize and interact with SERK1 by which it is phosphorylated. This protein is also reported to interact with the phosphorylated form of the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.O.I.H.G.S.X.
0.3439.8At1g64040842708TOPP3Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.O.I.H.G.S.X.
0.3235.7At3g61180825290zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVBO.I.H.G.S.X.
0.3133.8At4g17486827462unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.3133.8At4g05060825848vesicle-associated membrane family protein / VAMP family proteinF:structural molecule activity;P:biological_process unknown;C:chloroplast;PMFOO.I.H.G.S.X.
0.3133.8At5g61500836271ATG3F:molecular_function unknown;P:autophagy;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2930.3At1g71190843459SAG18 (SENESCENCE ASSOCIATED GENE 18)Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.O.I.H.G.S.X.
0.2930.3At4g27320828840universal stress protein (USP) family proteinContains a universal stress protein domain. Protein is phosphorylated in response to Phytophthora infestans zoospores and xylanase.O.I.H.G.S.X.
0.2726.2At5g27840832846TOPP8encodes a serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.O.I.H.G.S.X.
0.2726.2At3g09740820132SYP71 (SYNTAXIN OF PLANTS 71)syntaxin of plants 71 (SYP71)O.I.H.G.S.X.
0.2726.2At4g22750828372zinc finger (DHHC type) family proteinF:zinc ion binding;P:unknown;C:endomembrane system;MOFPO.I.H.G.S.X.
0.2624.4At4g28770828998-F:molecular_function unknown;P:unknown;C:plasma membrane, vacuole, membrane;POO.I.H.G.S.X.
0.2624.4At5g67380836873CKA1 (CASEIN KINASE ALPHA 1)casein kinase II catalytic subunit alphaO.I.H.G.S.X.
0.2624.4At5g55000835591FIP2FH protein interacting protein FIP2O.I.H.G.S.X.
0.2624.4At3g48680824029GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2)Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.O.I.H.G.S.X.
0.2624.4At5g56180835717ATARP8 (ACTIN-RELATED PROTEIN 8)encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.O.I.H.G.S.X.
0.2624.4At3g54840824649ARA6Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.O.I.H.G.S.X.
0.2624.4At5g63640836484VHS domain-containing protein / GAT domain-containing proteinF:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, plasma membrane;MFPOBO.I.H.G.S.X.
0.2522.6At1g72710843603CKL2 (CASEIN KINASE 1-LIKE PROTEIN 2)Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus.O.I.H.G.S.X.
0.2319.3At3g51040824268RTH (RTE1-HOMOLOG)Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids.O.I.H.G.S.X.
0.2217.5At5g50230835088nucleotide bindingF:nucleotide binding;P:multicellular organismal development;C:heterotrimeric G-protein complex;MFOBPAVO.I.H.G.S.X.
0.2115.8At3g19420821476ATPEN2 (ARABIDOPSIS THALIANA PTEN 2)F:phosphatase activity, protein tyrosine phosphatase activity;P:dephosphorylation;C:unknown;OMFBPVO.I.H.G.S.X.
0.2115.8At3g54480824613SKIP5 (SKP1/ASK-INTERACTING PROTEIN 5)Encodes an SKP1 interacting partner (SKIP5).O.I.H.G.S.X.
0.2115.8At3g05010819662transmembrane protein, putativeF:molecular_function unknown;P:biological_process unknown;C:membrane;MPBOO.I.H.G.S.X.
0.2014.4At4g31410829268unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.H.G.S.X.
0.2014.4At4g02080827368ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.O.I.H.G.S.X.
0.2014.4At5g51400835214unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.H.G.S.X.
0.1912.7At1g25280839112AtTLP10 (TUBBY LIKE PROTEIN 10)Member of TLP familyO.I.H.G.S.X.
0.1912.7At3g23540821933-F:unknown;P:unknown;C:cellular_component unknown;OBMFPAO.I.H.G.S.X.
0.1912.7At3g54860824651vacuolar protein sorting protein, putativeHomologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.O.I.H.G.S.X.
0.1811.4At1g71860843516PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.O.I.H.G.S.X.
0.1811.4At5g05700830454ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1)Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.O.I.H.G.S.X.
0.1710.2At1g18260838406suppressor of lin-12-like protein-related / sel-1 protein-relatedF:binding;P:biological_process unknown;C:endoplasmic reticulum, membrane;BOMFPVO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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