Co-expression analysis

Gene ID	Contig4442_at
Gene name
Homology with Arabidopsis	Similar to At4g05030: heavy-metal-associated domain-containing protein (HF=2e+0)
Module size	6 genes
NF	0.67
%ile	88.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig4442_at	Contig4442	-	-	2e+0	At4g05030	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig3172_at	Contig3172	-	-	3e-9	At1g22280	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.97	Contig20805_at	Contig20805	-	-	6e-1	At1g47300	F-box family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	Contig4017_at	Contig4017	-	-	1e+0	At2g16510	vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	rbaal21l24_s_at	rbaal21l24	-	-	5e-1	At4g34720	AVA-P1	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.98	Contig22054_at	Contig22054	-	-	8e-2	At2g02440	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.1	GSM160744	drought control rep2	GSE6990	Barley drought stress
2.8	93.1	GSM160815	drought control rep3	GSE6990	Barley drought stress
2.8	93.1	GSM68897	8 h control replicate 3	GSE3097	Barley1 salinity stress study
2.8	93.1	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
2.7	92.7	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
2.5	91.9	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
2.5	91.9	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
2.4	91.4	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM68894	3 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study
2.3	90.9	GSM160819	38% SWC rep1	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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