Co-expression analysis

Gene ID Contig4435_at
Gene name
Homology with ArabidopsisSimilar to At1g62510: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=2e-3)
Module size 6 genes
NF 0.15
%ile 18.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.3647.10.84Contig4435_atContig4435--2e-3At1g62510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4863.20.76Contig20128_atContig20128--3e-7At3g52940FK (FACKEL)O.I.H.G.S.X.
0.4356.40.81Contig3288_x_atContig3288--5e+0At3g51325zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2935.50.82HB18H23r_s_atHB18H23r--3e+0At5g01600ATFER1O.I.H.G.S.X.
0.2528.90.82Contig7491_atContig7491--3e-14At3g01540DRH1 (DEAD BOX RNA HELICASE 1)O.I.H.G.S.X.
0.032.60.78Contig12071_atContig12071--6e-1At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.699.5GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
10.999.2GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
6.198.0GSM398279Moroc9-75_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
6.097.9GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.697.7GSM398280Moroc9-75_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
5.397.4GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.196.2GSM398281Moroc9-75_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.196.2GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.096.0GSM440961Stressed lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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