Co-expression analysis

Gene ID	Contig4424_at
Gene name
Homology with Arabidopsis	Similar to At5g40150: peroxidase, putative (HF=1e-5)
Module size	6 genes
NF	0.41
%ile	56.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.96	Contig4424_at	Contig4424	-	-	1e-5	At5g40150	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig12737_at	Contig12737	-	-	2e-3	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig7277_at	Contig7277	-	-	3e-8	At5g11110	ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	HX01C23w_s_at	HX01C23w	-	-	5e+0	At5g17165	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig16886_at	Contig16886	-	-	5e+0	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	Contig9392_at	Contig9392	-	-	5e+0	At5g62780	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.0	98.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.5	96.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.4	96.6	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.7	95.5	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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