CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4406_x_at

Gene name
Homology with Arabidopsis Similar to At4g25110: AtMC2 (metacaspase 2) (HF=2e+0)

Module size 6 genes

NF 0.17

%ile 21.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 0.81 Contig4406_x_at Contig4406 - - 2e+0 At4g25110 AtMC2 (metacaspase 2) O.I. H.G. S.X.
0.50 66.9 0.85 Contig6005_x_at Contig6005 - - 3e-1 At1g20130 hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall O.I. H.G. S.X.
0.46 61.0 0.78 Contig6006_s_at Contig6006 - - 3e+0 At1g60830 U2 snRNP auxiliary factor large subunit, putative O.I. H.G. S.X.
0.30 37.0 0.79 Contig6007_at Contig6007 - - 2e+1 At5g61412 unknown protein O.I. H.G. S.X.
0.09 7.4 0.82 Contig8779_at Contig8779 - - 1e+1 At5g05930 guanylyl cyclase-related (GC1) O.I. H.G. S.X.
0.07 5.8 0.80 HV_CEb0011B08r2_at HV_CEb0011B08r2 - - 4e+0 At3g61880 CYP78A9 (CYTOCHROME P450 78A9) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.8 99.8 GSM68893 3 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
15.8 99.6 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
9.2 99.0 GSM238408 Pericarp 4DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.7 98.9 GSM68890 3 h control replicate 2 GSE3097 Barley1 salinity stress study
8.4 98.8 GSM68905 27 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
7.3 98.5 GSM68899 8 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
6.8 98.3 GSM68892 3 h salt stressed replicate 1 GSE3097 Barley1 salinity stress study
6.6 98.2 GSM68902 27 h control replicate 2 GSE3097 Barley1 salinity stress study
6.3 98.1 GSM68894 3 h salt stressed replicate 3 GSE3097 Barley1 salinity stress study
5.3 97.4 GSM68903 27 h control replicate3 GSE3097 Barley1 salinity stress study

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.220403.1.S1_at, orthologous to the query gene, Contig4406_x_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 92.6 PtpAffx.220403.1.S1_at At4g25110 hypothetical protein - 4e-1 At1g49500 unknown protein O.I. H.G. S.X.
0.26 45.2 PtpAffx.118061.1.S1_at At4g25110 - - 8e+0 At5g52990 vesicle-associated membrane protein-related O.I. H.G. S.X.
0.23 40.5 PtpAffx.213214.1.S1_at At4g25110 hypothetical protein - 4e-2 At3g45950 splicing factor-related O.I. H.G. S.X.
0.19 32.7 PtpAffx.207015.1.S1_at At4g25110 hypothetical protein - 1e-10 At4g33630 EX1 (EXECUTER1) O.I. H.G. S.X.
0.18 30.8 Ptp.3306.1.S1_at At4g25110 - - 3e+0 At1g17280 UBC34 (ubiquitin-conjugating enzyme 34) O.I. H.G. S.X.
0.17 29.1 PtpAffx.24341.1.A1_at At4g25110 - - 2e+0 At4g21216 unknown protein O.I. H.G. S.X.
0.13 21.6 PtpAffx.218722.1.S1_at At4g25110 hypothetical protein - 2e-1 At4g18070 unknown protein O.I. H.G. S.X.
0.12 19.6 PtpAffx.214803.1.S1_s_at At4g25110 hypothetical protein - 3e+0 At3g47510 unknown protein O.I. H.G. S.X.
0.11 18.1 PtpAffx.202211.1.S1_at At4g25110 hypothetical protein - 1e-1 At2g34990 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.06 9.8 PtpAffx.64572.1.S1_at At4g25110 hypothetical protein - 6e+0 At5g57790 unknown protein O.I. H.G. S.X.
0.06 9.8 PtpAffx.200069.1.S1_s_at At4g25110 hypothetical protein - 1e-1 At1g52470 hydrolase O.I. H.G. S.X.
0.06 9.8 PtpAffx.221797.1.S1_s_at At4g25110 hypothetical protein - 8e-1 At1g24210 paired amphipathic helix repeat-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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