Co-expression analysis

Gene ID Contig4406_x_at
Gene name
Homology with ArabidopsisSimilar to At4g25110: AtMC2 (metacaspase 2) (HF=2e+0)
Module size 6 genes
NF 0.17
%ile 21.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.81Contig4406_x_atContig4406--2e+0At4g25110AtMC2 (metacaspase 2)O.I.H.G.S.X.
0.5066.90.85Contig6005_x_atContig6005--3e-1At1g20130hydrolase, acting on ester bonds / lipase/ structural constituent of cell wallO.I.H.G.S.X.
0.4661.00.78Contig6006_s_atContig6006--3e+0At1g60830U2 snRNP auxiliary factor large subunit, putativeO.I.H.G.S.X.
0.3037.00.79Contig6007_atContig6007--2e+1At5g61412unknown proteinO.I.H.G.S.X.
0.097.40.82Contig8779_atContig8779--1e+1At5g05930guanylyl cyclase-related (GC1)O.I.H.G.S.X.
0.075.80.80HV_CEb0011B08r2_atHV_CEb0011B08r2--4e+0At3g61880CYP78A9 (CYTOCHROME P450 78A9)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.899.8GSM688933 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
15.899.6GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.299.0GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.798.9GSM688903 h control replicate 2GSE3097Barley1 salinity stress studyLink to GEO
8.498.8GSM6890527 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
7.398.5GSM688998 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
6.898.3GSM688923 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
6.698.2GSM6890227 h control replicate 2GSE3097Barley1 salinity stress studyLink to GEO
6.398.1GSM688943 h salt stressed replicate 3GSE3097Barley1 salinity stress studyLink to GEO
5.397.4GSM6890327 h control replicate3GSE3097Barley1 salinity stress studyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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