Co-expression analysis

Gene ID Contig4400_s_at
Gene name
Homology with ArabidopsisSimilar to At5g52050: MATE efflux protein-related (HF=8e-3)
Module size 6 genes
NF 0.44
%ile 61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5572.00.91Contig4400_s_atContig4400--8e-3At5g52050MATE efflux protein-relatedO.I.H.G.S.X.
0.4762.20.93Contig14946_atContig14946--2e-1At2g46340SPA1 (SUPPRESSOR OF PHYA-105 1)O.I.H.G.S.X.
0.4053.10.93Contig3801_atContig3801--4e-26At1g69840band 7 family proteinO.I.H.G.S.X.
0.4053.10.93Contig3802_atContig3802--3e-76At5g11770NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialO.I.H.G.S.X.
0.4053.10.94HVSMEf0001F23r2_x_atHVSMEf0001F23r2--9e+0At4g26030transcription factorO.I.H.G.S.X.
0.2935.50.93Contig3173_atContig3173--6e+0At4g05091unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5066.90.86Contig15047_atContig15047--3e+0At5g39950ATTRX2 (THIOREDOXIN 2)O.I.H.G.S.X.
0.5066.90.89Contig23752_atContig23752--2e+0At1g78310VQ motif-containing proteinO.I.H.G.S.X.
0.5066.90.97Contig3800_s_atContig3800--3e-27At1g69840band 7 family proteinO.I.H.G.S.X.
0.4053.10.90Contig6906_atContig6906--2e-3At4g15840protein bindingO.I.H.G.S.X.
0.4053.10.92Contig396_atContig396--3e-57At5g0951040S ribosomal protein S15 (RPS15D)O.I.H.G.S.X.
0.4053.10.93HW05J06u_atHW05J06u--4e+0At5g12340unknown proteinO.I.H.G.S.X.
0.3849.50.90Contig10250_atContig10250--2e-5At1g04950TAF6 (TBP-ASSOCIATED FACTOR 6)O.I.H.G.S.X.
0.3647.10.90HO05O09S_atHO05O09S--1e+1At5g61110protein binding / zinc ion bindingO.I.H.G.S.X.
0.3647.10.93Contig18085_atContig18085--4e-11At3g56370leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.3545.10.90Contig8385_atContig8385--5e-2At3g56740ubiquitin-associated (UBA)/TS-N domain-containing proteinO.I.H.G.S.X.
0.3342.60.89Contig12240_atContig12240--1e+0At5g25810tny (TINY)O.I.H.G.S.X.
0.3138.60.93Contig5744_atContig5744--1e-7At2g40600appr-1-p processing enzyme family proteinO.I.H.G.S.X.
0.3138.60.93HV_CEa0004J13r2_atHV_CEa0004J13r2--3e+0At5g62140unknown proteinO.I.H.G.S.X.
0.3037.00.90Contig6135_atContig6135--4e-1At5g16150PGLCT (PLASTIDIC GLC TRANSLOCATOR)O.I.H.G.S.X.
0.3037.00.90Contig11449_atContig11449--9e-29At3g57330ACA11 (autoinhibited Ca2+-ATPase 11)O.I.H.G.S.X.
0.3037.00.93Contig10402_atContig10402--2e-1At3g54780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2935.50.88Contig10047_atContig10047--7e-1At1g54060ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1)O.I.H.G.S.X.
0.2935.50.89Contig19398_atContig19398--4e-7At1g09530PIF3 (PHYTOCHROME INTERACTING FACTOR 3)O.I.H.G.S.X.
0.2935.50.90baal21h16_s_atbaal21h16--4e-6At4g38230CPK26O.I.H.G.S.X.
0.2935.50.92Contig4590_atContig4590--6e+0At2g18740small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putativeO.I.H.G.S.X.
0.2732.10.85Contig12925_s_atContig12925--2e-3At1g07530SCL14 (SCARECROW-LIKE 14)O.I.H.G.S.X.
0.2732.10.87Contig12242_atContig12242--2e-18At3g07020UDP-glucose:sterol glucosyltransferase (UGT80A2)O.I.H.G.S.X.
0.2732.10.88Contig12925_atContig12925--2e-3At1g07530SCL14 (SCARECROW-LIKE 14)O.I.H.G.S.X.
0.2630.40.92Contig1737_atContig1737--6e-3At1g55020LOX1O.I.H.G.S.X.
0.2528.90.91HVSMEh0086G04r2_atHVSMEh0086G04r2--3e+0At4g03280PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.093.8GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.692.3GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.591.9GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.591.9GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.491.4GSM372972genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.491.4GSM261065Xantha s-46 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.491.4GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.390.9GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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