Co-expression analysis

Gene ID	Contig4400_s_at
Gene name
Homology with Arabidopsis	Similar to At5g52050: MATE efflux protein-related (HF=8e-3)
Module size	6 genes
NF	0.44
%ile	61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	0.91	Contig4400_s_at	Contig4400	-	-	8e-3	At5g52050	MATE efflux protein-related	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.93	Contig14946_at	Contig14946	-	-	2e-1	At2g46340	SPA1 (SUPPRESSOR OF PHYA-105 1)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig3801_at	Contig3801	-	-	4e-26	At1g69840	band 7 family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.93	Contig3802_at	Contig3802	-	-	3e-76	At5g11770	NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	HVSMEf0001F23r2_x_at	HVSMEf0001F23r2	-	-	9e+0	At4g26030	transcription factor	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.93	Contig3173_at	Contig3173	-	-	6e+0	At4g05091	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	93.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.5	91.9	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.5	91.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM372972	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.4	91.4	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.4	91.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo

Inter-species module comparison

A co-expression module including the grape gene, 1614324_at, orthologous to the query gene, Contig4400_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1614324_at	At5g52050	hypothetical protein LOC100242265	-	2e-1	At1g64405	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1610053_at	At5g52050	-	-	2e+0	At5g60190	Ulp1 protease family protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1622512_at	At5g52050	hypothetical protein LOC100260682	-	4e-27	At4g38430	ROPGEF1	O.I.	H.G.	S.X.	Please select
0.25	30.5	1614933_at	At5g52050	hypothetical protein LOC100252359	-	1e+0	At2g32450	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	1617238_at	At5g52050	hypothetical protein LOC100258246	-	3e-27	At1g63430	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.20	22.4	1620836_at	At5g52050	hypothetical protein LOC100260803	-	1e-6	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.13	13.3	1607682_s_at	At5g52050	hypothetical protein LOC100243930	-	1e-9	At5g19980	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1615216_at	At5g52050	hypothetical protein LOC100240861	-	6e-34	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select
0.12	12.1	1615553_at	At5g52050	hypothetical protein LOC100261677	-	3e+0	At2g20690	lumazine-binding family protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	1612148_at	At5g52050	hypothetical protein LOC100252593	-	1e+0	At5g46780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage