Co-expression analysis

Gene ID Contig4400_s_at
Gene name
Homology with ArabidopsisSimilar to At5g52050: MATE efflux protein-related (HF=8e-3)
Module size 6 genes
NF 0.44
%ile 61.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5572.00.91Contig4400_s_atContig4400--8e-3At5g52050MATE efflux protein-relatedO.I.H.G.S.X.
0.4762.20.93Contig14946_atContig14946--2e-1At2g46340SPA1 (SUPPRESSOR OF PHYA-105 1)O.I.H.G.S.X.
0.4053.10.93Contig3801_atContig3801--4e-26At1g69840band 7 family proteinO.I.H.G.S.X.
0.4053.10.93Contig3802_atContig3802--3e-76At5g11770NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrialO.I.H.G.S.X.
0.4053.10.94HVSMEf0001F23r2_x_atHVSMEf0001F23r2--9e+0At4g26030transcription factorO.I.H.G.S.X.
0.2935.50.93Contig3173_atContig3173--6e+0At4g05091unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.093.8GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.893.1GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.692.3GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.591.9GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.591.9GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.491.4GSM372972genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
2.491.4GSM261065Xantha s-46 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.491.4GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.390.9GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1614324_at, orthologous to the query gene, Contig4400_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.91614324_atAt5g52050hypothetical protein LOC100242265-2e-1At1g64405unknown proteinO.I.H.G.S.X.
0.2632.01610053_atAt5g52050--2e+0At5g60190Ulp1 protease family proteinO.I.H.G.S.X.
0.2632.01622512_atAt5g52050hypothetical protein LOC100260682-4e-27At4g38430ROPGEF1O.I.H.G.S.X.
0.2530.51614933_atAt5g52050hypothetical protein LOC100252359-1e+0At2g32450calcium-binding EF hand family proteinO.I.H.G.S.X.
0.2530.51617238_atAt5g52050hypothetical protein LOC100258246-3e-27At1g63430leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.2022.41620836_atAt5g52050hypothetical protein LOC100260803-1e-6At1g32500ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)O.I.H.G.S.X.
0.1313.31607682_s_atAt5g52050hypothetical protein LOC100243930-1e-9At5g19980integral membrane family proteinO.I.H.G.S.X.
0.1313.31615216_atAt5g52050hypothetical protein LOC100240861-6e-34At3g63410APG1 (ALBINO OR PALE GREEN MUTANT 1)O.I.H.G.S.X.
0.1212.11615553_atAt5g52050hypothetical protein LOC100261677-3e+0At2g20690lumazine-binding family proteinO.I.H.G.S.X.
0.1010.31612148_atAt5g52050hypothetical protein LOC100252593-1e+0At5g46780VQ motif-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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