Co-expression analysis

Gene ID	Contig4360_at
Gene name
Homology with Arabidopsis	Similar to At5g61500: ATG3 (HF=2e-6)
Module size	7 genes
NF	0.54
%ile	74.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	0.96	Contig4360_at	Contig4360	-	-	2e-6	At5g61500	ATG3	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.96	Contig17823_at	Contig17823	-	-	2e+0	At5g52720	metal ion binding	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig10881_at	Contig10881	-	-	4e+0	At5g07470	PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig24303_at	Contig24303	-	-	3e-1	At3g09800	protein binding	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig16054_at	Contig16054	-	-	4e-1	At1g06830	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig13652_at	Contig13652	-	-	8e-7	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.1	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.7	96.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.5	95.1	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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