Co-expression analysis

Gene ID Contig4350_s_at
Gene name
Homology with ArabidopsisSimilar to At2g42790: CSY3 (citrate synthase 3) (HF=2e-85)
Module size 6 genes
NF 0.33
%ile 44.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5975.80.96Contig4350_s_atContig4350--2e-85At2g42790CSY3 (citrate synthase 3)O.I.H.G.S.X.
0.5066.90.97Contig5894_s_atContig5894--3e-1At5g33300chromosome-associated kinesin-relatedO.I.H.G.S.X.
0.4356.40.96Contig17683_atContig17683--2e+0At3g11730ATFP8O.I.H.G.S.X.
0.4356.40.97HU09F16u_s_atHU09F16u--8e-1At2g30980ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)O.I.H.G.S.X.
0.3342.60.97Contig6217_atContig6217--5e-86At5g19820emb2734 (embryo defective 2734)O.I.H.G.S.X.
0.119.40.97rbags18e07_s_atrbags18e07--4e-1At3g58170BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.598.6GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
5.697.7GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.595.1GSM3634645 mM B(OH)3 treatment (5B) - rep2GSE14521Late response to boron toxicity in barley leavesLink to GEO
3.494.8GSM161200cold treatment rep1GSE6993Barley low temperature stressLink to GEO
3.194.1GSM36346810 mM B(OH)3 treatment (10B) - rep3GSE14521Late response to boron toxicity in barley leavesLink to GEO
3.194.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM261035Dicktoo-chilling-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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