CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4341_s_at

Gene name
Homology with Arabidopsis Similar to At5g43940: HOT5 (sensitive to hot temperatures 5) (HF=3e-55)

Module size 18 genes

NF 0.35

%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 80.3 0.93 Contig4341_s_at Contig4341 - - 3e-55 At5g43940 HOT5 (sensitive to hot temperatures 5) O.I. H.G. S.X.
0.54 70.3 0.96 Contig5853_at Contig5853 - - 3e-1 At1g64140 - O.I. H.G. S.X.
0.54 70.3 0.95 EBem05_SQ004_D02_s_at EBem05_SQ004_D02 - - 2e+0 At3g18773 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.41 53.9 0.95 Contig2942_at Contig2942 - - 2e-1 Atmg00220 - O.I. H.G. S.X.
0.41 53.9 0.94 Contig7345_at Contig7345 - - 3e-1 At4g36750 quinone reductase family protein O.I. H.G. S.X.
0.39 50.5 0.95 Contig6461_s_at Contig6461 - - 7e-17 At1g52360 coatomer protein complex, subunit beta 2 (beta prime), putative O.I. H.G. S.X.
0.38 49.5 0.95 Contig5286_at Contig5286 - - 6e-1 At2g44310 calcium-binding EF hand family protein O.I. H.G. S.X.
0.38 49.5 0.95 Contig3294_s_at Contig3294 - - 5e-4 At5g02780 In2-1 protein, putative O.I. H.G. S.X.
0.37 47.9 0.96 HB24H11r_s_at HB24H11r - - 8e-1 At3g10590 myb family transcription factor O.I. H.G. S.X.
0.36 47.1 0.96 Contig3526_at Contig3526 - - 1e-3 At1g11910 aspartyl protease family protein O.I. H.G. S.X.
0.35 45.1 0.95 Contig16303_at Contig16303 - - 2e+0 Atmg01250 - O.I. H.G. S.X.
0.35 45.1 0.95 Contig4316_at Contig4316 - - 8e-17 At5g14520 pescadillo-related O.I. H.G. S.X.
0.32 40.3 0.96 EBma04_SQ003_K13_s_at EBma04_SQ003_K13 - - 2e+0 At3g60520 unknown protein O.I. H.G. S.X.
0.29 35.5 0.94 HVSMEm0007E01r2_at HVSMEm0007E01r2 - - 1e+0 At2g36355 unknown protein O.I. H.G. S.X.
0.28 35.5 0.94 Contig3135_at Contig3135 - - 3e-1 At3g03450 RGL2 (RGA-LIKE 2) O.I. H.G. S.X.
0.27 32.1 0.96 Contig5257_at Contig5257 - - 1e+0 At4g00200 DNA binding O.I. H.G. S.X.
0.19 19.6 0.95 Contig694_at Contig694 - - 5e-6 At1g32900 starch synthase, putative O.I. H.G. S.X.
0.17 16.9 0.95 Contig13861_at Contig13861 - - 5e-1 At3g49570 LSU3 (RESPONSE TO LOW SULFUR 3) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.4 98.1 GSM238417 Endosperm 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.3 96.4 GSM238416 Endosperm 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM238418 Endosperm 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
3.0 93.8 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
2.9 93.4 GSM238419 Endosperm 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.8 93.1 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley
2.6 92.3 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.6 92.3 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
2.6 92.3 GSM440976 Control seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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