Co-expression analysis

Gene ID Contig4324_s_at
Gene name
Homology with ArabidopsisSimilar to At4g26060: unknown protein (HF=8e+0)
Module size 9 genes
NF 0.68
%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.83Contig4324_s_atContig4324--8e+0At4g26060unknown proteinO.I.H.G.S.X.
0.8494.30.89Contig10453_atContig10453--9e-1At5g19485transferaseO.I.H.G.S.X.
0.7589.50.89Contig5969_atContig5969--7e-4At1g64970G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)O.I.H.G.S.X.
0.6784.70.90Contig4324_atContig4324--8e+0At4g26060unknown proteinO.I.H.G.S.X.
0.6784.70.90Contig11946_atContig11946--2e+0At1g49950DNA-binding protein, putativeO.I.H.G.S.X.
0.6784.70.92Contig13318_atContig13318--1e-2At3g59010pectinesterase family proteinO.I.H.G.S.X.
0.6380.30.89Contig5966_atContig5966--9e-2At4g33360terpene cyclase/mutase-relatedO.I.H.G.S.X.
0.5369.70.89Contig5809_atContig5809--2e-14At1g58440XF1O.I.H.G.S.X.
0.4863.20.89Contig5490_atContig5490--3e-1At3g14680CYP72A14O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7489.10.69Contig14905_s_atContig14905--1e-4At1g15730PRLI-interacting factor L, putativeO.I.H.G.S.X.
0.7187.10.83HE01D12u_atHE01D12u--9e+0At5g41640unknown proteinO.I.H.G.S.X.
0.6380.30.83Contig9648_s_atContig9648--2e+0At5g37478-O.I.H.G.S.X.
0.6380.30.90Contig2772_s_atContig2772--4e-50At5g49910CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)O.I.H.G.S.X.
0.5674.30.84Contig3552_atContig3552--7e-1At4g29273LCR23 (Low-molecular-weight cysteine-rich 23)O.I.H.G.S.X.
0.5572.00.81Contig15600_atContig15600--2e+0At4g20760short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5066.90.87Contig17953_atContig17953--2e+0At3g47100unknown proteinO.I.H.G.S.X.
0.4661.00.75Contig12945_atContig12945--8e-17At5g50400PAP27 (PURPLE ACID PHOSPHATASE 27)O.I.H.G.S.X.
0.4458.90.71Contig6208_atContig6208--2e-10At4g12110SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1)O.I.H.G.S.X.
0.4458.90.88Contig4445_atContig4445--3e-1At2g32190unknown proteinO.I.H.G.S.X.
0.4356.40.77Contig3271_s_atContig3271--1e-6At5g38660APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)O.I.H.G.S.X.
0.4255.20.91Contig5763_s_atContig5763C-8,7-sterol isomerase-2e+0At2g14890AGP9 (ARABINOGALACTAN PROTEIN 9)O.I.H.G.S.X.
0.4255.20.71Contig8898_atContig8898--2e-29At2g25570bindingO.I.H.G.S.X.
0.3849.50.87Contig10484_atContig10484--6e-10At3g24650ABI3 (ABA INSENSITIVE 3)O.I.H.G.S.X.
0.3849.50.85Contig5531_atContig5531--6e-8At3g45640ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)O.I.H.G.S.X.
0.3747.90.86Contig1343_atContig1343--2e-40At2g0125060S ribosomal protein L7 (RPL7B)O.I.H.G.S.X.
0.3647.10.83HVSMEg0009E19r2_s_atHVSMEg0009E19r2--1e+1At5g05000TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)O.I.H.G.S.X.
0.3647.10.80Contig19684_atContig19684--3e-1At4g26730methyltransferaseO.I.H.G.S.X.
0.3545.10.81Contig11003_s_atContig11003--1e+0At4g36410UBC17 (UBIQUITIN-CONJUGATING ENZYME 17)O.I.H.G.S.X.
0.3443.60.80EBro07_SQ002_B11_atEBro07_SQ002_B11--3e+0At3g56380ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)O.I.H.G.S.X.
0.3342.60.87Contig5666_atContig5666--2e-6At3g29100VTI13O.I.H.G.S.X.
0.3342.60.88Contig18698_atContig18698--4e+0At5g13080WRKY75O.I.H.G.S.X.
0.3240.30.84Contig19118_atContig19118--7e-6At5g50180protein kinase, putativeO.I.H.G.S.X.
0.3240.30.79Contig6102_atContig6102--1e-15At5g49820emb1879 (embryo defective 1879)O.I.H.G.S.X.
0.3240.30.81Contig2769_s_atContig2769--2e+0At1g72610GER1 (GERMIN-LIKE PROTEIN 1)O.I.H.G.S.X.
0.3240.30.78Contig3554_atContig3554--6e-13At3g48890ATMP2O.I.H.G.S.X.
0.3138.60.91EBpi01_SQ002_O15_atEBpi01_SQ002_O15--2e+0At5g47130Bax inhibitor-1 family / BI-1 familyO.I.H.G.S.X.
0.3037.00.79S0001000056F16F1_atS0001000056F16F1--4e+0At5g16050GRF5 (GENERAL REGULATORY FACTOR 5)O.I.H.G.S.X.
0.2935.50.86Contig23678_atContig23678--5e-1At3g12750ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)O.I.H.G.S.X.
0.2835.50.83Contig11254_atContig11254--3e+0At5g63085-O.I.H.G.S.X.
0.2732.10.89Contig5808_atContig5808--2e+0At1g62510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2528.90.91Contig19483_atContig19483--8e-39At1g07170-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.297.4GSM688893 h control replicate 1GSE3097Barley1 salinity stress studyLink to GEO
4.796.9GSM261026ABA-Early-rep3GSE10328ABA experimentLink to GEO
4.396.4GSM261023ABA-Control-rep3GSE10328ABA experimentLink to GEO
4.196.2GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.196.2GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
4.096.0GSM6890527 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
4.096.0GSM688988 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
3.995.8GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.795.5GSM146372Golden Promise shoot Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.795.5GSM688913 h control replicate 3GSE3097Barley1 salinity stress studyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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