Co-expression analysis

Gene ID Contig4324_s_at
Gene name
Homology with ArabidopsisSimilar to At4g26060: unknown protein (HF=8e+0)
Module size 9 genes
NF 0.68
%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.83Contig4324_s_atContig4324--8e+0At4g26060unknown proteinO.I.H.G.S.X.
0.8494.30.89Contig10453_atContig10453--9e-1At5g19485transferaseO.I.H.G.S.X.
0.7589.50.89Contig5969_atContig5969--7e-4At1g64970G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)O.I.H.G.S.X.
0.6784.70.90Contig4324_atContig4324--8e+0At4g26060unknown proteinO.I.H.G.S.X.
0.6784.70.90Contig11946_atContig11946--2e+0At1g49950DNA-binding protein, putativeO.I.H.G.S.X.
0.6784.70.92Contig13318_atContig13318--1e-2At3g59010pectinesterase family proteinO.I.H.G.S.X.
0.6380.30.89Contig5966_atContig5966--9e-2At4g33360terpene cyclase/mutase-relatedO.I.H.G.S.X.
0.5369.70.89Contig5809_atContig5809--2e-14At1g58440XF1O.I.H.G.S.X.
0.4863.20.89Contig5490_atContig5490--3e-1At3g14680CYP72A14O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.297.4GSM688893 h control replicate 1GSE3097Barley1 salinity stress studyLink to GEO
4.796.9GSM261026ABA-Early-rep3GSE10328ABA experimentLink to GEO
4.396.4GSM261023ABA-Control-rep3GSE10328ABA experimentLink to GEO
4.196.2GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
4.196.2GSM261021ABA-Control-rep1GSE10328ABA experimentLink to GEO
4.096.0GSM6890527 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
4.096.0GSM688988 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
3.995.8GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.795.5GSM146372Golden Promise shoot Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.795.5GSM688913 h control replicate 3GSE3097Barley1 salinity stress studyLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.987.1.S1_at, orthologous to the query gene, Contig4324_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6791.1Ptp.987.1.S1_atAt4g26060--5e-29At3g54420ATEP3O.I.H.G.S.X.
0.6791.1PtpAffx.57544.1.A1_atAt4g26060--3e-1At3g07920translation initiation factorO.I.H.G.S.X.
0.5078.6Ptp.6077.1.S1_s_atAt4g26060hypothetical protein-1e+0At4g21920unknown proteinO.I.H.G.S.X.
0.3661.6Ptp.7181.1.S1_atAt4g26060hypothetical protein-2e-6At1g49570peroxidase, putativeO.I.H.G.S.X.
0.3661.6PtpAffx.225157.1.S1_atAt4g26060hypothetical protein-1e-13At1g14550anionic peroxidase, putativeO.I.H.G.S.X.
0.3559.7PtpAffx.200248.1.S1_atAt4g26060hypothetical protein-3e-7At3g43740leucine-rich repeat family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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