Co-expression analysis

Gene ID Contig4290_at
Gene name
Homology with ArabidopsisSimilar to At4g32390: phosphate translocator-related (HF=4e-15)
Module size 6 genes
NF 0.37
%ile 50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig4290_atContig4290--4e-15At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.7388.70.96Contig7557_s_atContig7557--6e-18At5g17530phosphoglucosamine mutase family proteinO.I.H.G.S.X.
0.5066.90.97Contig9136_atContig9136--1e-5At3g51140-O.I.H.G.S.X.
0.3240.30.96Contig6995_atContig6995--2e-8At5g57270unknown proteinO.I.H.G.S.X.
0.2122.60.96Contig6581_atContig6581--6e-2At3g26330CYP71B37O.I.H.G.S.X.
0.1818.20.96Contig3633_s_atContig3633--7e-1At3g13480unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6178.70.95Contig6604_atContig6604--1e-4At1g18100E12A11O.I.H.G.S.X.
0.5674.30.92HT06H20u_atHT06H20u--4e+0At4g27760FEY (FOREVER YOUNG)O.I.H.G.S.X.
0.4661.00.94Contig4491_s_atContig4491--7e-1At5g45410unknown proteinO.I.H.G.S.X.
0.4661.00.94HF23D07r_s_atHF23D07r--3e+0At1g68185ubiquitin-relatedO.I.H.G.S.X.
0.4661.00.95Contig10415_atContig10415--2e+0At5g44570unknown proteinO.I.H.G.S.X.
0.4458.90.95Contig1323_s_atContig1323--1e-72At3g56800CAM3 (CALMODULIN 3)O.I.H.G.S.X.
0.4458.90.95Contig1394_s_atContig1394--0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.4458.90.95EBem04_SQ003_G17_s_atEBem04_SQ003_G17--3e+0At3g48070protein binding / zinc ion bindingO.I.H.G.S.X.
0.4356.40.95Contig8033_atContig8033--3e-10At3g61050NTMC2T4O.I.H.G.S.X.
0.4053.10.94Contig1568_x_atContig1568--1e+0At1g03680ATHM1O.I.H.G.S.X.
0.4053.10.94Contig8075_atContig8075--5e-8At1g65420unknown proteinO.I.H.G.S.X.
0.4053.10.94Contig2927_atContig2927--3e-36At4g26840SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)O.I.H.G.S.X.
0.4053.10.95Contig5340_atContig5340--6e-3At3g13330bindingO.I.H.G.S.X.
0.4053.10.96Contig7546_s_atContig7546--1e+0At1g63950heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.3849.50.95Contig5116_atContig5116--6e-15At2g18740small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putativeO.I.H.G.S.X.
0.3647.10.96Contig4760_s_atContig4760--1e+0At4g38700disease resistance-responsive family proteinO.I.H.G.S.X.
0.3545.10.95Contig4806_atContig4806--4e-1At4g08685SAH7O.I.H.G.S.X.
0.3342.60.94Contig3738_atContig3738--3e-20At1g50200ALATS (ALANYL-TRNA SYNTHETASE)O.I.H.G.S.X.
0.3342.60.95Contig13169_atContig13169--2e-24At1g76860small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeO.I.H.G.S.X.
0.3342.60.96Contig4175_atContig4175--1e-19At3g07100protein transport protein Sec24, putativeO.I.H.G.S.X.
0.3240.30.94Contig5320_atContig5320--9e-4At4g20070ATAAH (Arabidopsis thaliana Allantoate Amidohydrolase)O.I.H.G.S.X.
0.3240.30.95Contig15025_atContig15025--2e+0At5g48655zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3037.00.96Contig15983_atContig15983--2e+0At5g49010SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)O.I.H.G.S.X.
0.2935.50.94Contig8906_atContig8906--2e-1At4g26780AR192O.I.H.G.S.X.
0.2935.50.97Contig15156_atContig15156--2e+0At1g48210serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.2732.10.94Contig24709_atContig24709--1e+0At5g26840unknown proteinO.I.H.G.S.X.
0.2732.10.95Contig5978_atContig5978--2e+0At5g65070MAF4 (MADS AFFECTING FLOWERING 4)O.I.H.G.S.X.
0.2732.10.95Contig25736_atContig25736--1e+0At2g46690auxin-responsive family proteinO.I.H.G.S.X.
0.2630.40.91HVSMEl0006J08r2_x_atHVSMEl0006J08r2--3e+0At5g38220hydrolaseO.I.H.G.S.X.
0.2528.90.95Contig9197_atContig9197--4e-2At2g21940shikimate kinase, putativeO.I.H.G.S.X.
0.2528.90.96Contig6152_atContig6152--7e-2At3g59140ATMRP14O.I.H.G.S.X.
0.2528.90.96Contig5117_atContig5117--8e-2At5g60500undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.0GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.796.9GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.296.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.196.2GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.695.3GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.695.3GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM146380Maythorpe shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.595.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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