Co-expression analysis

Gene ID Contig4290_at
Gene name
Homology with ArabidopsisSimilar to At4g32390: phosphate translocator-related (HF=4e-15)
Module size 6 genes
NF 0.37
%ile 50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig4290_atContig4290--4e-15At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.7388.70.96Contig7557_s_atContig7557--6e-18At5g17530phosphoglucosamine mutase family proteinO.I.H.G.S.X.
0.5066.90.97Contig9136_atContig9136--1e-5At3g51140-O.I.H.G.S.X.
0.3240.30.96Contig6995_atContig6995--2e-8At5g57270unknown proteinO.I.H.G.S.X.
0.2122.60.96Contig6581_atContig6581--6e-2At3g26330CYP71B37O.I.H.G.S.X.
0.1818.20.96Contig3633_s_atContig3633--7e-1At3g13480unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.0GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.796.9GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.296.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.196.2GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.695.3GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.695.3GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM146380Maythorpe shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.595.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1611048_at, orthologous to the query gene, Contig4290_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7892.61611048_atAt4g32390hypothetical protein LOC100255990-2e-21At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.4969.31611314_atAt4g32390--9e-42At5g3553040S ribosomal protein S3 (RPS3C)O.I.H.G.S.X.
0.3548.51610292_atAt4g32390hypothetical protein LOC100255417-3e-50At5g26360chaperonin, putativeO.I.H.G.S.X.
0.2837.71611729_atAt4g32390hypothetical protein LOC100253220-1e-3At4g27640importin beta-2 subunit family proteinO.I.H.G.S.X.
0.2632.01620899_atAt4g32390hypothetical protein LOC100257267-9e-2At4g14110COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)O.I.H.G.S.X.
0.2124.01618413_atAt4g32390hypothetical protein LOC100256600-0At4g14960TUA6O.I.H.G.S.X.
0.2124.01617987_atAt4g32390--4e-81At3g62290ATARFA1E (ADP-ribosylation factor A1E)O.I.H.G.S.X.
0.2022.41618060_atAt4g32390hypothetical protein LOC100252303-5e-41At1g29150ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)O.I.H.G.S.X.
0.1819.41607850_atAt4g32390hypothetical protein LOC100245395-2e-8At5g44170-O.I.H.G.S.X.
0.1819.41610324_a_atAt4g32390hypothetical protein LOC100254667-8e-4At5g42100ATBG_PAPO.I.H.G.S.X.
0.1819.41616324_s_atAt4g32390hypothetical protein LOC100249027-2e-35At1g18080ATARCAO.I.H.G.S.X.
0.1515.61608867_s_atAt4g32390hypothetical protein LOC100261444-3e-15At4g2623060S ribosomal protein L31 (RPL31B)O.I.H.G.S.X.
0.1515.61607886_atAt4g32390hypothetical protein LOC100255368-1e-9At3g19760eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.1515.61611402_atAt4g32390hypothetical protein LOC100243581-2e-21At5g4643060S ribosomal protein L32 (RPL32B)O.I.H.G.S.X.
0.1313.31612324_s_atAt4g32390hypothetical protein LOC100261737-4e-122At2g3161040S ribosomal protein S3 (RPS3A)O.I.H.G.S.X.
0.1313.31614403_s_atAt4g32390hypothetical protein LOC100250515-2e+0At4g11430hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1212.11609170_atAt4g32390similar to 40S ribosomal S4 protein-3e-110At5g5842040S ribosomal protein S4 (RPS4D)O.I.H.G.S.X.
0.099.41608672_s_atAt4g32390--6e-33At2g2158040S ribosomal protein S25 (RPS25B)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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