Co-expression analysis

Gene ID	Contig4290_at
Gene name
Homology with Arabidopsis	Similar to At4g32390: phosphate translocator-related (HF=4e-15)
Module size	6 genes
NF	0.37
%ile	50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig4290_at	Contig4290	-	-	4e-15	At4g32390	phosphate translocator-related	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig7557_s_at	Contig7557	-	-	6e-18	At5g17530	phosphoglucosamine mutase family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig9136_at	Contig9136	-	-	1e-5	At3g51140	-	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig6995_at	Contig6995	-	-	2e-8	At5g57270	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig6581_at	Contig6581	-	-	6e-2	At3g26330	CYP71B37	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.96	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.7	96.9	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.2	96.3	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.1	96.2	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.6	95.3	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.6	95.3	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4	94.8	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.214193.1.S1_x_at, orthologous to the query gene, Contig4290_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	PtpAffx.214193.1.S1_x_at	At4g32390	hypothetical protein	-	8e-71	At2g25520	phosphate translocator-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.104472.1.A1_at	At4g32390	hypothetical protein	-	5e-44	At4g35220	cyclase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.16432.1.S1_a_at	At4g32390	hypothetical protein	-	3e-8	At3g24010	ING1 (INHIBITOR OF GROWTH 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	Ptp.2112.1.S1_at	At4g32390	hypothetical protein	-	8e-31	At2g22370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.141946.1.S1_s_at	At4g32390	hypothetical protein	-	2e-23	At2g22370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.47500.1.A1_at	At4g32390	hypothetical protein	-	5e+0	At5g60870	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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