Co-expression analysis

Gene ID Contig4290_at
Gene name
Homology with ArabidopsisSimilar to At4g32390: phosphate translocator-related (HF=4e-15)
Module size 6 genes
NF 0.37
%ile 50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig4290_atContig4290--4e-15At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.7388.70.96Contig7557_s_atContig7557--6e-18At5g17530phosphoglucosamine mutase family proteinO.I.H.G.S.X.
0.5066.90.97Contig9136_atContig9136--1e-5At3g51140-O.I.H.G.S.X.
0.3240.30.96Contig6995_atContig6995--2e-8At5g57270unknown proteinO.I.H.G.S.X.
0.2122.60.96Contig6581_atContig6581--6e-2At3g26330CYP71B37O.I.H.G.S.X.
0.1818.20.96Contig3633_s_atContig3633--7e-1At3g13480unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.198.0GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.796.9GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.296.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.196.2GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.695.3GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO
3.695.3GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM146380Maythorpe shoot Salt, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.595.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM146369Golden Promise shoot Control, biological rep1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
3.494.8GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g32390, orthologous to the query gene, Contig4290_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.8089.8At4g32390829374phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBO.I.H.G.S.X.
0.7385.5At2g34250817986protein transport protein sec61, putativeF:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:response to salt stress, protein secretion;C:membrane;BOMAFPO.I.H.G.S.X.
0.6176.7At4g12650826878-F:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane, vacuole;MPOFO.I.H.G.S.X.
0.5570.6At1g64650842773-F:unknown;P:unknown;C:plasma membrane;BPMOFAO.I.H.G.S.X.
0.4659.8At1g14670838029endomembrane protein 70, putativeF:unknown;P:transport;C:integral to membrane, Golgi apparatus, membrane;MPOFO.I.H.G.S.X.
0.4457.2At1g61790842476OST3/OST6 family proteinF:oligosaccharide transmembrane transporter activity;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane, chloroplast;MFPOO.I.H.G.S.X.
0.4457.2At3g25540822140LAG1LAG1 homolog 1O.I.H.G.S.X.
0.3439.8At5g18520831970-F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFBO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage