CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig4290_at

Gene name
Homology with Arabidopsis Similar to At4g32390: phosphate translocator-related (HF=4e-15)

Module size 6 genes

NF 0.37

%ile 50.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 0.96 Contig4290_at Contig4290 - - 4e-15 At4g32390 phosphate translocator-related O.I. H.G. S.X.
0.73 88.7 0.96 Contig7557_s_at Contig7557 - - 6e-18 At5g17530 phosphoglucosamine mutase family protein O.I. H.G. S.X.
0.50 66.9 0.97 Contig9136_at Contig9136 - - 1e-5 At3g51140 - O.I. H.G. S.X.
0.32 40.3 0.96 Contig6995_at Contig6995 - - 2e-8 At5g57270 unknown protein O.I. H.G. S.X.
0.21 22.6 0.96 Contig6581_at Contig6581 - - 6e-2 At3g26330 CYP71B37 O.I. H.G. S.X.
0.18 18.2 0.96 Contig3633_s_at Contig3633 - - 7e-1 At3g13480 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.1 98.0 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.7 96.9 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.2 96.3 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.1 96.2 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
3.6 95.3 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
3.6 95.3 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.5 95.1 GSM146380 Maythorpe shoot Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5 95.1 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.4 94.8 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.4 94.8 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g32390, orthologous to the query gene, Contig4290_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.80 89.8 At4g32390 829374 phosphate translocator-related F:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOB O.I. H.G. S.X.
0.73 85.5 At2g34250 817986 protein transport protein sec61, putative F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:response to salt stress, protein secretion;C:membrane;BOMAFP O.I. H.G. S.X.
0.61 76.7 At4g12650 826878 - F:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane, vacuole;MPOF O.I. H.G. S.X.
0.55 70.6 At1g64650 842773 - F:unknown;P:unknown;C:plasma membrane;BPMOFA O.I. H.G. S.X.
0.46 59.8 At1g14670 838029 endomembrane protein 70, putative F:unknown;P:transport;C:integral to membrane, Golgi apparatus, membrane;MPOF O.I. H.G. S.X.
0.44 57.2 At1g61790 842476 OST3/OST6 family protein F:oligosaccharide transmembrane transporter activity;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane, chloroplast;MFPO O.I. H.G. S.X.
0.44 57.2 At3g25540 822140 LAG1 LAG1 homolog 1 O.I. H.G. S.X.
0.34 39.8 At5g18520 831970 - F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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